Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACK2T8_RS00860 Genome accession   NZ_CP176513
Coordinates   177959..179326 (+) Length   455 a.a.
NCBI ID   WP_036655524.1    Uniprot ID   A0AAP5JTN6
Organism   Paenibacillus larvae subsp. larvae strain B-3650     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 172959..184326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2T8_RS00840 - 173154..173615 (+) 462 WP_036655527.1 CtsR family transcriptional regulator -
  ACK2T8_RS00845 - 173629..174153 (+) 525 WP_023482201.1 UvrB/UvrC motif-containing protein -
  ACK2T8_RS00850 - 174206..175276 (+) 1071 WP_042119372.1 protein arginine kinase -
  ACK2T8_RS00855 clpC 175333..177783 (+) 2451 WP_357683424.1 ATP-dependent protease ATP-binding subunit ClpC -
  ACK2T8_RS00860 radA 177959..179326 (+) 1368 WP_036655524.1 DNA repair protein RadA Machinery gene
  ACK2T8_RS00865 disA 179359..180438 (+) 1080 WP_023482197.1 DNA integrity scanning diadenylate cyclase DisA -
  ACK2T8_RS00870 pssA 180510..181253 (+) 744 WP_023482196.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  ACK2T8_RS00875 - 181359..181754 (-) 396 WP_023482195.1 hypothetical protein -
  ACK2T8_RS00880 - 181894..182964 (+) 1071 WP_036655521.1 PIN/TRAM domain-containing protein -
  ACK2T8_RS00885 ispD 183018..183716 (+) 699 WP_023482193.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACK2T8_RS00890 ispF 183717..184196 (+) 480 WP_023482192.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49954.50 Da        Isoelectric Point: 6.6098

>NTDB_id=1080516 ACK2T8_RS00860 WP_036655524.1 177959..179326(+) (radA) [Paenibacillus larvae subsp. larvae strain B-3650]
MGKQKTKFYCQDCGYESIKWLGKCPDCGAWNTFVEEIQKIMKTQGMDSSLFQTKEKPQPIINIESSPEPRVITENRELNR
VLGGGFVPGSLILVGGDPGIGKSTLLLQTSYSLAKSGQKVLYISGEESVKQTRLRADRLNAMSRLLYVLCETNLESIEEA
IREVEPDFMVIDSIQTVYHPSVTSAPGTVSQVRECTGHFMRIAKTKGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHSYRVLRAVKNRFGSTNEIGIFEMQETGLTEVHNPSELFLSERPLGVAGSTVVASMEGTRPVLVEIQALVSMTNFPS
PRRMATGIDYNRLSLIIAVLEKRVGLFLQNQDAYLNVAGGVRLDEPAVDLAAAISIASSFKEQATQPFDVVFGEVGLTGE
VRGVSRVEQRVNEAQKLGFKRVIMPEKSLKGFTPPRGIEVIGVNTVDEALAITLG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1080516 ACK2T8_RS00860 WP_036655524.1 177959..179326(+) (radA) [Paenibacillus larvae subsp. larvae strain B-3650]
ATGGGTAAACAGAAGACTAAGTTTTATTGTCAGGATTGTGGGTACGAATCGATTAAATGGCTGGGAAAATGTCCGGACTG
CGGAGCTTGGAATACATTTGTCGAGGAAATACAAAAAATTATGAAGACACAAGGAATGGATTCATCCTTGTTTCAAACGA
AAGAAAAACCACAACCAATCATAAATATAGAAAGCAGCCCGGAGCCTAGGGTAATTACAGAGAACAGAGAACTCAACAGG
GTATTGGGGGGAGGGTTCGTTCCCGGGTCCCTTATATTAGTCGGAGGGGATCCAGGAATAGGAAAGTCCACTCTTCTTCT
TCAAACTTCTTATTCTTTAGCAAAATCCGGCCAGAAGGTTTTATATATATCCGGAGAGGAATCGGTGAAACAGACAAGGC
TGCGGGCGGACCGTTTAAATGCTATGTCACGATTGCTTTATGTCCTCTGCGAGACGAATCTGGAATCCATTGAGGAGGCA
ATTCGGGAAGTAGAACCTGATTTTATGGTTATCGATTCCATTCAGACGGTATACCATCCTTCTGTTACTTCTGCTCCAGG
TACTGTATCCCAGGTCAGGGAATGTACAGGGCATTTCATGAGAATTGCCAAAACGAAAGGAATTGCTACTGTACTGGTAG
GCCATGTCACCAAAGAAGGGGCCATTGCCGGACCAAGAATGCTGGAGCATATGGTTGATTGTGTCCTTTATTTCGAGGGA
GAGCGACATCATTCTTACCGCGTTCTTCGGGCTGTCAAAAACCGTTTTGGCTCAACTAATGAAATCGGTATTTTTGAAAT
GCAGGAAACCGGTTTGACTGAAGTTCATAATCCTTCCGAGCTGTTTTTGTCAGAGAGGCCTCTGGGGGTTGCAGGTTCCA
CGGTAGTCGCCAGTATGGAGGGGACACGACCCGTATTGGTTGAGATTCAGGCGTTGGTCTCAATGACCAACTTTCCTTCT
CCAAGAAGGATGGCTACAGGTATAGATTATAATCGCTTATCTTTAATCATTGCCGTTTTGGAGAAAAGAGTAGGATTATT
TTTACAAAATCAGGATGCTTATTTGAATGTCGCAGGCGGAGTTAGACTCGATGAACCTGCGGTAGATCTGGCCGCGGCTA
TCAGTATTGCATCCAGCTTCAAAGAACAAGCTACCCAGCCTTTTGATGTTGTTTTTGGTGAGGTAGGGCTTACCGGCGAA
GTAAGGGGAGTCTCCCGGGTAGAGCAGCGGGTCAACGAAGCCCAGAAGCTTGGATTTAAACGTGTCATTATGCCCGAAAA
AAGTCTTAAAGGATTCACACCACCACGCGGGATTGAAGTGATAGGGGTTAACACGGTAGATGAAGCATTAGCCATTACAC
TAGGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(351-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.49

100

0.688
  radA Streptococcus mitis NCTC 12261

58.667

98.901

0.58
  radA Streptococcus mitis SK321

58.667

98.901

0.58
  radA Streptococcus pneumoniae Rx1

58.444

98.901

0.578
  radA Streptococcus pneumoniae D39

58.444

98.901

0.578
  radA Streptococcus pneumoniae R6

58.444

98.901

0.578
  radA Streptococcus pneumoniae TIGR4

58.444

98.901

0.578

Multiple sequence alignment