Detailed information NTG1080254

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJ3Y0_RS11225
• Genome accession: NZ_CP176471
• Coordinates: 2432281..2433261 (+)
• Length: 326 a.a.
• NCBI ID: WP_017059027.1
• Uniprot ID: A0A1E5FN76
• Organism: Vibrio sp. BS-M-Sm-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2427281..2438261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJ3Y0_RS11195 (ACJ3Y0_11195)	ispD	2427529..2428230 (+)	702	WP_146490605.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACJ3Y0_RS11200 (ACJ3Y0_11200)	ispF	2428233..2428712 (+)	480	WP_086711987.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACJ3Y0_RS11205 (ACJ3Y0_11205)	truD	2428735..2429781 (+)	1047	WP_372383828.1	tRNA pseudouridine(13) synthase TruD	-
ACJ3Y0_RS11210 (ACJ3Y0_11210)	surE	2429863..2430606 (+)	744	WP_086711985.1	5'/3'-nucleotidase SurE	-
ACJ3Y0_RS11215 (ACJ3Y0_11215)	-	2430607..2431233 (+)	627	WP_372383829.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACJ3Y0_RS11220 (ACJ3Y0_11220)	nlpD	2431268..2432182 (+)	915	WP_050620526.1	murein hydrolase activator NlpD	-
ACJ3Y0_RS11225 (ACJ3Y0_11225)	rpoS	2432281..2433261 (+)	981	WP_017059027.1	RNA polymerase sigma factor RpoS	Regulator
ACJ3Y0_RS11230 (ACJ3Y0_11230)	mutS	2433402..2435963 (-)	2562	WP_372383830.1	DNA mismatch repair protein MutS	-
ACJ3Y0_RS11235 (ACJ3Y0_11235)	pncC	2436088..2436582 (+)	495	WP_372384819.1	nicotinamide-nucleotide amidase	-
ACJ3Y0_RS11240 (ACJ3Y0_11240)	recA	2436722..2437762 (+)	1041	WP_017056586.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37218.43 Da
• Isoelectric Point: 5.1506

>NTDB_id=1080254 ACJ3Y0_RS11225 WP_017059027.1 2432281..2433261(+) (rpoS) [Vibrio sp. BS-M-Sm-2]
MSISNAVTKEEFDLDQATTEPEALGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1080254 ACJ3Y0_RS11225 WP_017059027.1 2432281..2433261(+) (rpoS) [Vibrio sp. BS-M-Sm-2]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACGAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCTTAGATGCCACTCAACTGT
ATTTAGGCGAAATCGGTTTCTCACCACTACTAACCGCAGAAGAAGAAGTGCTTTACGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGCTT
GGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGTGGCTTCC
GCTTCTCAACTTACGCAACATGGTGGATTCGTCAAACCATTGAACGGGCGTTGATGAATCAGACTCGCACTATCCGTTTG
CCAATTCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCAGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAACGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCACTGATATTCTGGCTTGATGAACTAAACCCGAAGCAGAAAGAAGTGCT
TGCACGTCGATTTGGACTACTAGGTTATGAACCGTCAACGCTAGAAGAAGTTGGCCGTGAAATCAGCCTAACTCGTGAGC
GAGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTTATCAAGCAAGGTCTGAATATGGAAAACCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

3D structure

• AlphaFold DB: A0A1E5FN76

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.737	100	0.837