Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC5044_RS06055 Genome accession   NZ_CP176434
Coordinates   1163221..1164141 (-) Length   306 a.a.
NCBI ID   WP_410689891.1    Uniprot ID   -
Organism   Campylobacter lari strain 3439-36     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1158221..1169141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5044_RS06035 (UPTC5044_1189) cysK 1159190..1160092 (-) 903 WP_257929007.1 cysteine synthase A -
  UPTC5044_RS06040 (UPTC5044_1190) - 1160189..1160491 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC5044_RS06045 (UPTC5044_1191) - 1160570..1161706 (-) 1137 WP_257929008.1 hypothetical protein -
  UPTC5044_RS06050 (UPTC5044_1192) - 1161715..1163220 (-) 1506 WP_410689890.1 MBOAT family O-acyltransferase -
  UPTC5044_RS06055 (UPTC5044_1193) waaF 1163221..1164141 (-) 921 WP_410689891.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC5044_RS06060 (UPTC5044_1194) - 1164155..1165267 (-) 1113 WP_257929110.1 hypothetical protein -
  UPTC5044_RS06065 (UPTC5044_1195) - 1165276..1166778 (-) 1503 WP_410689892.1 MBOAT family O-acyltransferase -
  UPTC5044_RS06070 (UPTC5044_1196) - 1166836..1167642 (+) 807 WP_257929101.1 glycosyltransferase family 2 protein -
  UPTC5044_RS06075 - 1168213..1168437 (-) 225 WP_214135449.1 hypothetical protein -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34734.70 Da        Isoelectric Point: 10.1918

>NTDB_id=1080154 UPTC5044_RS06055 WP_410689891.1 1163221..1164141(-) (waaF) [Campylobacter lari strain 3439-36]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQVLVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNSLKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIERFLLKEDIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQESAKIAHLDLACMPCMQKVCPLKHHKCMKDLSPDVVINLAKNFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1080154 UPTC5044_RS06055 WP_410689891.1 1163221..1164141(-) (waaF) [Campylobacter lari strain 3439-36]
ATGAATATTTTTATCAATCTTCCTACTTGGCTTGGCGATGCAGTAATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTAAGTACGGAACTTTTTAAACGTTTTGAAAATGCTCAAGTCT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAAATTTTACAAGCTAGAAAAAACCTTGGCAAATTTGATCTAGCTTTTTCA
TTTCGCTCGGCATTTTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTTATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATTCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCGCATTTTGGAAGTGCTAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGTTCAACTCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCGTTTTCTTTTAAAAGAAGACATAAAAGCAAAAAATCTTTGTGGTAAAACTAGTATTT
ATACTTTATGTAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGTTCTACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAGTGCTAAAATAGCTCA
TCTTGATCTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCATAAATGTATGAAAGACTTAAGCCCTG
ATGTGGTAATAAATTTAGCAAAAAATTTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.217

100

0.657

Multiple sequence alignment