Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKWPP_RS10975 Genome accession   NZ_CP176418
Coordinates   2192939..2194306 (-) Length   455 a.a.
NCBI ID   WP_409373959.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2182699..2195296 2192939..2194306 within 0


Gene organization within MGE regions


Location: 2182699..2195296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS10940 (ACKWPP_10940) - 2182699..2183364 (-) 666 WP_105184269.1 hypothetical protein -
  ACKWPP_RS10945 (ACKWPP_10945) - 2183369..2183815 (-) 447 WP_024388519.1 LytTR family DNA-binding domain-containing protein -
  ACKWPP_RS10950 (ACKWPP_10950) - 2183955..2190647 (-) 6693 WP_409374407.1 DUF445 family protein -
  ACKWPP_RS10955 (ACKWPP_10955) - 2190746..2191222 (-) 477 Protein_2123 transposase -
  ACKWPP_RS10960 (ACKWPP_10960) - 2191254..2191379 (-) 126 WP_409374408.1 IS630 transposase-related protein -
  ACKWPP_RS10965 (ACKWPP_10965) - 2191401..2192114 (-) 714 WP_409373958.1 TIGR00266 family protein -
  ACKWPP_RS10970 (ACKWPP_10970) - 2192321..2192815 (-) 495 WP_024401383.1 carbonic anhydrase -
  ACKWPP_RS10975 (ACKWPP_10975) radA 2192939..2194306 (-) 1368 WP_409373959.1 DNA repair protein RadA Machinery gene
  ACKWPP_RS10980 (ACKWPP_10980) - 2194313..2194846 (-) 534 Protein_2128 histidine phosphatase family protein -
  ACKWPP_RS10985 (ACKWPP_10985) - 2194853..2195296 (-) 444 WP_002939955.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49861.30 Da        Isoelectric Point: 6.1911

>NTDB_id=1080087 ACKWPP_RS10975 WP_409373959.1 2192939..2194306(-) (radA) [Streptococcus suis strain KKAHC02]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALSSSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVVGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1080087 ACKWPP_RS10975 WP_409373959.1 2192939..2194306(-) (radA) [Streptococcus suis strain KKAHC02]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGGCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAGCTCAATGAAGTGTCGTCTATTCAAGTGGCCCGCACCAAGACCAATATGGAGGAGTTTAAC
CGCGTCCTCGGTGGTGGAGTGGTGCCGGGCAGCCTAGTTCTCATTGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTTCAAGTATCTACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTATCGGGGGAAGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATTAAGCCAGATTTCCTGATTATCGACTCTATTCAGACCATTATGAGTCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTGGATACCGTTCTTTATTTTGAGGGC
GAGCGGCAACACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAATGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTCCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG
CGATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAC
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCAGTTTTAGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTCTCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAGCAACGGATTAACGAAGCCGCCAAACTAGGCTTTACCAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACTGTTGTTGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.929

99.341

0.903
  radA Streptococcus pneumoniae Rx1

90.708

99.341

0.901
  radA Streptococcus pneumoniae D39

90.708

99.341

0.901
  radA Streptococcus pneumoniae R6

90.708

99.341

0.901
  radA Streptococcus pneumoniae TIGR4

90.708

99.341

0.901
  radA Streptococcus mitis SK321

90.487

99.341

0.899
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

99.56

0.62

Multiple sequence alignment