Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKVEV_RS16255 Genome accession   NZ_CP176417
Coordinates   3160849..3162225 (-) Length   458 a.a.
NCBI ID   WP_401012497.1    Uniprot ID   -
Organism   Lysinibacillus sp. 38-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3155849..3167225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVEV_RS16235 gltX 3156494..3157954 (-) 1461 WP_409367331.1 glutamate--tRNA ligase -
  ACKVEV_RS16240 ispF 3158078..3158554 (-) 477 WP_409367332.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACKVEV_RS16245 ispD 3158771..3159463 (-) 693 WP_409367333.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACKVEV_RS16250 - 3159476..3160561 (-) 1086 WP_409367334.1 PIN/TRAM domain-containing protein -
  ACKVEV_RS16255 radA 3160849..3162225 (-) 1377 WP_401012497.1 DNA repair protein RadA Machinery gene
  ACKVEV_RS16260 - 3162316..3164760 (-) 2445 WP_409367335.1 ATP-dependent Clp protease ATP-binding subunit -
  ACKVEV_RS16265 - 3164750..3165859 (-) 1110 WP_409367336.1 protein arginine kinase -
  ACKVEV_RS16270 - 3165856..3166398 (-) 543 WP_409367337.1 UvrB/UvrC motif-containing protein -
  ACKVEV_RS16275 - 3166412..3166882 (-) 471 WP_340821721.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50074.91 Da        Isoelectric Point: 7.3824

>NTDB_id=1080023 ACKVEV_RS16255 WP_401012497.1 3160849..3162225(-) (radA) [Lysinibacillus sp. 38-6]
MAKKKTKFVCTGCGYESAKWMGRCPGCGEWNKMVEEVEVVAKGPRGAFQHSATVTQKAIPIIQVEAAEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLELLNQ
TIDDVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVTRIEQRVIEAAKLGFKRAFIPASNIGGWDFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1080023 ACKVEV_RS16255 WP_401012497.1 3160849..3162225(-) (radA) [Lysinibacillus sp. 38-6]
ATGGCGAAGAAAAAAACTAAATTTGTCTGTACAGGTTGTGGCTATGAATCTGCAAAGTGGATGGGGCGCTGTCCAGGATG
TGGTGAGTGGAATAAAATGGTTGAGGAAGTGGAGGTCGTAGCAAAAGGGCCACGTGGAGCTTTCCAACATTCAGCAACAG
TAACGCAAAAGGCGATACCGATTATCCAAGTAGAGGCAGCGGAGGAGTCTCGTGTAGCAACGGAAATGGGCGAACTCAAT
CGTGTGTTAGGTGGCGGTATCGTCCCAGGTTCACTAGTTTTAATTGGTGGTGATCCGGGGATTGGGAAATCCACGTTATT
ATTACAAGTATCTGCATTGCTTTCGAATAAAGGACATCGTGTGCTCTACATTTCTGGTGAGGAGTCTATTCGCCAAACGA
AGCTACGTGCAGAACGTTTAGGTGTAATCTCACAAGAGCTTTATATTTATTCGGAAACGAATTTAGAGTTATTAAACCAA
ACGATTGATGATGTCCAACCGAAGTTTGTGATTGTCGATTCTATTCAAACGGTGTTTCATCCAGAGGTGACGAGTGCACC
TGGTAGCGTGTCGCAAGTACGTGAATGTACAGCGGAGCTTATGCGAATTGCCAAGACGAAGGGCATTGCTATTTTCTTAG
TTGGACATGTGACGAAGGAAGGGCAAATTGCGGGGCCACGTATTTTAGAGCATATGGTGGATACAGTGCTGTATTTCGAA
GGAGAACGACATCACAACCATCGAATTTTACGAAGTCAGAAAAACCGCTTTGGCTCTACAAATGAAATTGCTATCTTTGA
AATGCTTCAGGGAGGCTTAAAGGAAGTTTTGAATCCGTCAGAGTTGTTTTTACAGGAACGTTCCCAAGGTGCTGCAGGTT
CGACGATTGTAGCATCGATGGAGGGGACGAGACCGATTTTAGTAGAAATTCAATCGCTCGTAACGCCAACAAGCTTTAAT
TATCCAAAACGGATGGCAACTGGCGTGGACCAAAATCGAGTGCAATTGCTAATGGCAGTGCTGGAAAAGCGAATGGGCCT
CATGCTACAAGCACAAGATGCATATATTAAAGTTGCTGGTGGTGTAAAGCTTGATGAGCCTGCAATTGACCTAGCGGTGT
TGACAAGTATCGTATCGAGCTTTAAGGATCAGGCAGTGCGTGCTACCGATTGCTTTATTGGCGAAGTAGGTTTAACAGGT
GAGGTTCGTCGTGTAACACGCATTGAGCAACGTGTGATTGAGGCGGCAAAGCTAGGCTTTAAGCGAGCGTTTATTCCTGC
TTCAAATATTGGCGGCTGGGATTTCCCGCAAGGTATTGAAATTGTCGGTGTGGAAACAATTAAGGATGCATTGAATGCTT
GTTTTAGAGAGTTGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

AAA domain (AAA_25)

(66-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.264

99.127

0.697
  radA Streptococcus pneumoniae Rx1

62.5

99.563

0.622
  radA Streptococcus pneumoniae D39

62.5

99.563

0.622
  radA Streptococcus pneumoniae R6

62.5

99.563

0.622
  radA Streptococcus pneumoniae TIGR4

62.5

99.563

0.622
  radA Streptococcus mitis NCTC 12261

62.5

99.563

0.622
  radA Streptococcus mitis SK321

62.5

99.563

0.622

Multiple sequence alignment