Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACKVEV_RS15110 Genome accession   NZ_CP176417
Coordinates   2951717..2952667 (-) Length   316 a.a.
NCBI ID   WP_409367170.1    Uniprot ID   -
Organism   Lysinibacillus sp. 38-6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2946717..2957667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVEV_RS15085 - 2947728..2948375 (+) 648 WP_409367165.1 hypothetical protein -
  ACKVEV_RS15090 - 2948628..2948942 (-) 315 WP_409367166.1 antibiotic biosynthesis monooxygenase family protein -
  ACKVEV_RS15095 - 2948944..2949951 (-) 1008 WP_409367167.1 siderophore ABC transporter substrate-binding protein -
  ACKVEV_RS15100 - 2950013..2950774 (-) 762 WP_409367168.1 ABC transporter ATP-binding protein -
  ACKVEV_RS15105 - 2950771..2951724 (-) 954 WP_409367169.1 iron chelate uptake ABC transporter family permease subunit -
  ACKVEV_RS15110 ceuB 2951717..2952667 (-) 951 WP_409367170.1 ABC transporter permease Machinery gene
  ACKVEV_RS15115 - 2952946..2954001 (-) 1056 WP_409367171.1 hypothetical protein -
  ACKVEV_RS15120 menC 2954067..2955176 (-) 1110 WP_409367172.1 o-succinylbenzoate synthase -
  ACKVEV_RS15125 - 2955198..2956022 (-) 825 WP_409367173.1 GNAT family N-acetyltransferase -
  ACKVEV_RS15130 - 2956036..2957163 (-) 1128 WP_409367174.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34795.01 Da        Isoelectric Point: 10.0821

>NTDB_id=1080022 ACKVEV_RS15110 WP_409367170.1 2951717..2952667(-) (ceuB) [Lysinibacillus sp. 38-6]
MKIRYLLTATVVLSIVSLFIGVVNIKPSDLLDFESEETRLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYKADII
QNITAWLQGDFSLIMKGRYELLYISVPVLILTYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALVSTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLLCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1080022 ACKVEV_RS15110 WP_409367170.1 2951717..2952667(-) (ceuB) [Lysinibacillus sp. 38-6]
ATGAAAATAAGATATCTTTTAACAGCAACTGTCGTGTTGTCTATAGTGTCGCTATTCATTGGTGTTGTCAATATTAAACC
AAGTGACTTATTAGACTTCGAATCAGAAGAAACAAGACTATTTTTGATTAGTCGTGTACCAAGACTAGTAGCCATTTTGC
TAGCTGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTGTCACCAACTACAGCA
GGTACTTTAGATGCTACGAAATTAGGTGTTCTAATTTCAATGATGTTTTTTACAAATGTCACGTACTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTATTGTTTATGCAAATATTAAATCGAATAAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGTAATATTCTTTCGTCCATTACGACATTCTTTGCGTATAAGGCGGACATTATC
CAAAACATTACTGCATGGTTACAAGGAGATTTTTCTTTAATAATGAAAGGCCGTTATGAGCTTTTATACATAAGTGTACC
TGTGTTAATTTTAACTTACATTTATGCAAATCGCTTCACAGTGGCTGGAATGGGTGAGGATTTTGCCAAAAATCTTGGTC
TTTCCTACAAATTCGTTGTGAACTTAGGGTTAGTGTTAGTAGCACTAGTTTCAACAACAGTGGTATTAACAGTAGGTGTG
ATTCCATTCCTTGGTTTGATTATTCCCAATATTATTTCGCTGTTCAAAGGAGATAATCTTGCAAAGACATTACCACACAC
GGCTTTACTCGGTATGTCATTCCTATTATTATGTGATATTTTAGGACGCGTCTTGATTTTCCCTTATGAAATTCCGATTA
GTATGACGGTCGGCGTCATCGGAAGTGCCATCTTCCTATTTATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment