Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACKVEV_RS07980 Genome accession   NZ_CP176417
Coordinates   1537095..1538786 (-) Length   563 a.a.
NCBI ID   WP_409369869.1    Uniprot ID   -
Organism   Lysinibacillus sp. 38-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1532095..1543786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVEV_RS07960 - 1533887..1534087 (-) 201 WP_409369865.1 hypothetical protein -
  ACKVEV_RS07965 - 1534278..1534655 (-) 378 WP_409369866.1 PH domain-containing protein -
  ACKVEV_RS07970 spo0A 1534875..1535666 (-) 792 WP_409369867.1 sporulation transcription factor Spo0A -
  ACKVEV_RS07975 - 1536021..1536968 (-) 948 WP_409369868.1 SpoIVB peptidase S55 domain-containing protein -
  ACKVEV_RS07980 recN 1537095..1538786 (-) 1692 WP_409369869.1 DNA repair protein RecN Machinery gene
  ACKVEV_RS07985 ahrC 1538938..1539387 (-) 450 WP_402921652.1 transcriptional regulator AhrC/ArgR -
  ACKVEV_RS07990 - 1539489..1540307 (-) 819 WP_409369870.1 TlyA family RNA methyltransferase -
  ACKVEV_RS07995 dxs 1540307..1542208 (-) 1902 WP_409369871.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACKVEV_RS08000 - 1542373..1543254 (-) 882 WP_409369872.1 polyprenyl synthetase family protein -
  ACKVEV_RS08005 xseB 1543260..1543493 (-) 234 WP_409369873.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63301.12 Da        Isoelectric Point: 4.7255

>NTDB_id=1080011 ACKVEV_RS07980 WP_409369869.1 1537095..1538786(-) (recN) [Lysinibacillus sp. 38-6]
MLRELSIRNFAIIEDLTVSFSDGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKKAELGGLFHISSATHPVYKK
LEEAGIEIEEDSIILRRDLNDTGKSVCRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDHFAEEQLAPIL
EKYSTQYNEYRALKKELASISIDEQLMAQRIDLYQFQMKELEDANLKLGEEDELVDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALDDAAMIDEQFKEASESVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEDIIAYYEKIKTELNELLNRDEILQVKERKVLEMEVVLNGLAEELSAVRKEAANQLSEAIMAELRELHMEKAKFIVNFD
ALPYFDINGKDQVIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGVTSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLAEIDTRARIEEVSRMMSGAEITDLTLQHATELLKMANERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=1080011 ACKVEV_RS07980 WP_409369869.1 1537095..1538786(-) (recN) [Lysinibacillus sp. 38-6]
GTGTTAAGAGAGCTTAGTATTCGAAATTTTGCTATCATTGAGGATTTAACGGTTAGTTTTTCAGATGGTTTAACTGTGTT
AACAGGTGAAACGGGTGCCGGAAAATCTATTATTATTGATGCGGTGCATTTGCTTGCTGGTGGTAGAGGCAATTCAGAAT
TTATTCGTCATGGCGCTAAAAAAGCCGAATTAGGTGGGCTATTCCATATTTCAAGTGCAACACATCCAGTCTATAAAAAA
CTGGAAGAGGCAGGCATTGAAATAGAAGAGGATTCCATTATTTTGCGCCGTGATTTAAATGATACAGGCAAAAGTGTTTG
TCGGGTAAACGGCAAATTAGTACCATTATCCGTTTTACGTGATATTGGGGCAAGCTTGATTGATATTCATGGTCAACATG
AAAACCAGGAACTTATGGACGAAAAGCAGCACATTAATTTACTCGACCATTTTGCCGAAGAGCAACTCGCACCGATCCTT
GAAAAATACAGTACACAATACAATGAATATCGGGCATTAAAAAAAGAATTAGCGTCCATTTCAATCGATGAGCAGTTAAT
GGCACAGCGAATAGATTTGTACCAATTTCAAATGAAAGAGCTTGAAGATGCAAATTTAAAGCTAGGTGAAGAAGATGAGC
TTGTAGATGAACGTCGCCGTTTAATGAATTTCAATAAAATTTTTGAACGTTCAAGTGCCGCTTATGAAGCCATCCAAGGT
GAAACAAAAGGTCTTGATTGGATTGGTACGGCCATGGGCGCATTAGATGATGCTGCGATGATCGACGAACAGTTTAAAGA
GGCTTCGGAGTCTGTAACAACAGCTTTTTATGCGTTACAGGATGCGGCGTACCAAGTGAAAAATGTTTTAGATGAGCTTG
AATTCGATCCTGCACGGTTAAATGAAGTGGAACAACGACTTGCGCTATTCCAAAATTTAAAACGCAAATACGGCTCCACT
GTGGAAGACATAATTGCCTATTATGAGAAAATCAAAACAGAGCTGAACGAGCTGTTAAACCGCGATGAAATTTTACAAGT
AAAAGAACGAAAAGTGCTTGAAATGGAAGTCGTCTTAAATGGGCTTGCAGAAGAATTATCCGCAGTTCGCAAAGAAGCGG
CAAATCAATTAAGTGAAGCCATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATCGTAAATTTTGAT
GCTTTACCTTATTTTGATATCAATGGTAAAGACCAAGTGATCTTTTATATTTCAACGAATGTTGGTGAACCACCAAAGTC
TCTACCAAAAATTGCTTCTGGAGGAGAATTATCGCGTATGATGCTAGCGTTAAAAACGATTTTCTCTTCTTCAAATGGTG
TGACGTCCATTATTTTTGATGAAGTGGATACAGGTGTCAGTGGACGTGTCGCACAAGCAATTGCTGAAAAAATTGCTGCC
ATTTCTGTTAATTCTCAAGTTTTGTGTATTTCACATTTGCCGCAAGTCGCAGCAATGGCCGATCATCATTATTTTATTAA
AAAAGAAGTGGAACATGATCGTACATTTACATCATTAGCTGAAATTGATACGCGTGCTCGTATTGAAGAAGTAAGTAGAA
TGATGTCAGGTGCAGAAATTACCGATTTAACGTTACAGCATGCAACAGAATTATTAAAAATGGCGAATGAAAGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.85

100

0.544

Multiple sequence alignment