Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   ACKWCM_RS06685 Genome accession   NZ_CP176416
Coordinates   1349924..1352026 (-) Length   700 a.a.
NCBI ID   WP_024426836.1    Uniprot ID   -
Organism   Bacillus safensis strain GUCCb3-7     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1344924..1357026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWCM_RS06660 (ACKWCM_06660) - 1345341..1345583 (+) 243 WP_024424676.1 aspartyl-phosphate phosphatase Spo0E family protein -
  ACKWCM_RS06665 (ACKWCM_06665) - 1345630..1347135 (-) 1506 WP_024424677.1 ATP-binding protein -
  ACKWCM_RS06670 (ACKWCM_06670) - 1347340..1347795 (+) 456 WP_024424678.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACKWCM_RS06675 (ACKWCM_06675) motB 1347988..1348758 (-) 771 WP_024424679.1 flagellar motor protein MotB -
  ACKWCM_RS06680 (ACKWCM_06680) motA 1348751..1349545 (-) 795 WP_024424680.1 flagellar motor stator protein MotA -
  ACKWCM_RS06685 (ACKWCM_06685) clpC 1349924..1352026 (-) 2103 WP_024426836.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  ACKWCM_RS06690 (ACKWCM_06690) - 1352271..1353314 (+) 1044 WP_034623360.1 membrane protein -
  ACKWCM_RS06695 (ACKWCM_06695) queC 1353589..1354245 (+) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  ACKWCM_RS06700 (ACKWCM_06700) queD 1354246..1354686 (+) 441 WP_024424684.1 6-carboxytetrahydropterin synthase QueD -
  ACKWCM_RS06705 (ACKWCM_06705) queE 1354679..1355410 (+) 732 WP_034623358.1 7-carboxy-7-deazaguanine synthase QueE -
  ACKWCM_RS06710 (ACKWCM_06710) queF 1355426..1355923 (+) 498 WP_024426839.1 preQ(1) synthase -
  ACKWCM_RS06715 (ACKWCM_06715) - 1356356..1356718 (-) 363 WP_034667321.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77966.55 Da        Isoelectric Point: 4.9961

>NTDB_id=1079962 ACKWCM_RS06685 WP_024426836.1 1349924..1352026(-) (clpC) [Bacillus safensis strain GUCCb3-7]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQAAGHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTEKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGTADKTVKVGFQSDQEEAFEEQSLIDSLSSYFKPEFLNRFDSIIQFDSLDREDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=1079962 ACKWCM_RS06685 WP_024426836.1 1349924..1352026(-) (clpC) [Bacillus safensis strain GUCCb3-7]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCGCAACTCTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAGGTCATGCCCCAAACATGGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TCAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATTTATTTATTAGATGTTTCTTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCATCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGTGAACTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTCATCGTAGATGAGCCAACACAAGATGAAGCGATCGACATCTTAAAAGGCATTCAAGATAA
ATACGAGGCTTATCATGGTGTCACCTATTCAGATGAAGCAATCAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCATTTACCGGATAAAGCCATTGATTTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAGCTGACAAATCGATTAGCGGAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGAAAAAGAGCATATCGTTACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGGAAACTCCAAGCAGACGAACAAACTAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGGCAGGAGCATGCGGTTGATAAAGTGGCCAAAGCCGTGAAAAG
AAGCAGAGCTGGATTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGTTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACATTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATGTTCCTGCAAA
TCATGGAAGACGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCACCGCAGATAAAACAGTCAAAGTGGGCTTCCAATCTGATCAGGAAGAAGCGTTTGAGGAACAATCACTCATTGA
TTCACTGAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAATTTGATTCACTAGACAGAGAGG
ACTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTTCATGTCACA
AATGAAGCAAAAGAAAAGATCGCAGAGCTTGGATATCATCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCACGTTGAAGACCAAATGACGGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)

AAA lid domain (AAA_lid_9)

(253-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

57.182

100

0.603
  clpE Streptococcus mutans UA159

56.469

100

0.599
  clpE Streptococcus pneumoniae Rx1

55.663

100

0.576
  clpE Streptococcus pneumoniae D39

55.663

100

0.576
  clpE Streptococcus pneumoniae R6

55.663

100

0.576
  clpE Streptococcus pneumoniae TIGR4

55.663

100

0.576
  clpC Bacillus subtilis subsp. subtilis str. 168

53.881

95.714

0.516
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.086

93.143

0.439
  clpC Streptococcus thermophilus LMD-9

46.285

92.286

0.427
  clpC Streptococcus thermophilus LMG 18311

46.13

92.286

0.426
  clpC Streptococcus mutans UA159

44.172

93.143

0.411
  clpC Streptococcus pneumoniae TIGR4

45.064

89.714

0.404
  clpC Streptococcus pneumoniae Rx1

45.265

89

0.403
  clpC Streptococcus pneumoniae D39

45.265

89

0.403

Multiple sequence alignment