Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKGJP_RS35695 Genome accession   NZ_CP176395
Coordinates   8460657..8462024 (-) Length   455 a.a.
NCBI ID   WP_409343447.1    Uniprot ID   -
Organism   Paenibacillus sp. MBLB4367     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8455657..8467024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKGJP_RS35665 (ACKGJP_35665) ispF 8455757..8456236 (-) 480 WP_409343441.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACKGJP_RS35670 (ACKGJP_35670) ispD 8456233..8456937 (-) 705 WP_409343442.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACKGJP_RS35675 (ACKGJP_35675) - 8456992..8458083 (-) 1092 WP_409343443.1 PIN/TRAM domain-containing protein -
  ACKGJP_RS35680 (ACKGJP_35680) - 8458312..8458707 (+) 396 WP_409343444.1 DUF1573 domain-containing protein -
  ACKGJP_RS35685 (ACKGJP_35685) pssA 8458811..8459509 (-) 699 WP_409343445.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  ACKGJP_RS35690 (ACKGJP_35690) disA 8459562..8460635 (-) 1074 WP_409343446.1 DNA integrity scanning diadenylate cyclase DisA -
  ACKGJP_RS35695 (ACKGJP_35695) radA 8460657..8462024 (-) 1368 WP_409343447.1 DNA repair protein RadA Machinery gene
  ACKGJP_RS35700 (ACKGJP_35700) clpC 8462216..8464660 (-) 2445 WP_409343448.1 ATP-dependent protease ATP-binding subunit ClpC -
  ACKGJP_RS35705 (ACKGJP_35705) - 8464725..8465792 (-) 1068 WP_409343449.1 protein arginine kinase -
  ACKGJP_RS35710 (ACKGJP_35710) - 8465807..8466322 (-) 516 WP_409343450.1 UvrB/UvrC motif-containing protein -
  ACKGJP_RS35715 (ACKGJP_35715) - 8466431..8466892 (-) 462 WP_409343451.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49869.54 Da        Isoelectric Point: 6.6935

>NTDB_id=1079900 ACKGJP_RS35695 WP_409343447.1 8460657..8462024(-) (radA) [Paenibacillus sp. MBLB4367]
MAKPKTKFSCQECGFESPKWLGKCPSCQAWNSMVEEVETVVKTQGFQSSHLRTQEKATSIIDIESAREPRILTNNQELNR
VLGGGIVPGSLILVGGDPGIGKSTLLLQTSFALTEKQLKVLYISGEESSRQIKLRADRLEVTSEQLFVLCETNVELIMES
IEQLKPDFVVIDSIQTVYHPAIASAPGSVSQVRECTSHFMRIAKMKGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHSYRLLRAVKNRFGSTNEIGIFEMLESGLVEVNNPSELFLSERPIGVSGSTVVASMEGTRPVLVELQALVSPTNFPT
PRRMSTGVDHNRLSLIIAVLEKRMGMFLQNQDAFLNVAGGVKLDEPAVDLAIAVSIASSFRDKPTEPYDVVFGEIGLTGE
VRGVSRVDQRVKEAQKLGFKRVILPAKSLKGWTQPEGIEIVGVNTVTEALAQALR

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1079900 ACKGJP_RS35695 WP_409343447.1 8460657..8462024(-) (radA) [Paenibacillus sp. MBLB4367]
ATGGCTAAACCAAAAACGAAATTCAGCTGCCAGGAGTGCGGCTTCGAATCGCCGAAATGGTTGGGCAAATGCCCCAGCTG
CCAGGCGTGGAATAGTATGGTCGAAGAAGTGGAAACCGTAGTAAAGACGCAAGGCTTCCAATCTTCGCATCTTCGAACGC
AAGAAAAGGCGACTTCGATCATAGATATAGAAAGTGCGCGCGAACCGCGCATATTGACGAACAACCAAGAGTTGAACCGG
GTGCTCGGTGGCGGAATCGTGCCGGGTTCTCTTATCCTCGTAGGCGGCGATCCGGGAATCGGGAAATCGACGCTTCTGCT
GCAGACATCGTTTGCTTTAACGGAAAAGCAGCTGAAGGTGCTTTACATATCCGGGGAGGAATCATCCCGGCAGATCAAGC
TTCGGGCGGACCGATTGGAAGTTACGTCCGAACAATTGTTCGTGCTATGCGAAACGAATGTGGAGCTCATTATGGAGTCG
ATCGAGCAGCTAAAGCCGGACTTCGTCGTCATCGATTCGATTCAGACGGTATATCATCCGGCAATCGCATCGGCACCGGG
CAGCGTTTCGCAGGTTCGGGAATGCACGTCCCATTTTATGCGTATAGCTAAGATGAAGGGTATCGCTACGGTACTAGTCG
GACATGTTACGAAAGAAGGGGCGATCGCAGGTCCGCGGCTGCTTGAGCATATGGTGGACTGCGTGCTTTATTTTGAAGGA
GAGCGGCATCATTCGTACCGGCTCCTGCGGGCGGTGAAAAACCGTTTCGGTTCGACCAACGAAATCGGCATTTTTGAAAT
GCTCGAATCGGGATTGGTGGAAGTGAATAACCCTTCGGAGTTATTCCTCTCGGAACGGCCCATCGGGGTGTCGGGTTCAA
CCGTTGTCGCCAGCATGGAAGGGACGCGGCCGGTACTCGTGGAACTGCAAGCGCTTGTTTCGCCTACGAATTTTCCGACG
CCAAGAAGAATGTCGACCGGTGTCGATCACAACCGGCTATCCCTTATTATTGCGGTGCTTGAGAAGCGGATGGGCATGTT
TTTGCAAAATCAGGATGCGTTTCTGAATGTGGCGGGCGGCGTGAAGCTGGACGAACCGGCAGTCGACTTGGCGATTGCGG
TCAGCATTGCGTCGAGCTTTCGCGATAAACCGACCGAGCCTTATGACGTCGTGTTCGGCGAGATCGGCCTGACCGGGGAA
GTGCGCGGGGTGTCCCGCGTAGATCAGCGTGTGAAAGAAGCGCAGAAGCTTGGCTTCAAAAGAGTCATTTTGCCGGCTAA
AAGCTTAAAGGGCTGGACGCAGCCCGAAGGCATCGAAATCGTTGGCGTGAATACGGTGACGGAAGCGCTCGCGCAGGCGC
TGCGCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.659
  radA Streptococcus mitis NCTC 12261

57.269

99.78

0.571
  radA Streptococcus pneumoniae Rx1

57.269

99.78

0.571
  radA Streptococcus pneumoniae D39

57.269

99.78

0.571
  radA Streptococcus pneumoniae R6

57.269

99.78

0.571
  radA Streptococcus pneumoniae TIGR4

57.269

99.78

0.571
  radA Streptococcus mitis SK321

57.269

99.78

0.571

Multiple sequence alignment