Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACKGJP_RS06605 Genome accession   NZ_CP176395
Coordinates   1564276..1565229 (+) Length   317 a.a.
NCBI ID   WP_409344875.1    Uniprot ID   -
Organism   Paenibacillus sp. MBLB4367     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559276..1570229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKGJP_RS06580 (ACKGJP_06580) mqnC 1559580..1560713 (+) 1134 WP_409344870.1 cyclic dehypoxanthinyl futalosine synthase -
  ACKGJP_RS06585 (ACKGJP_06585) - 1560860..1561117 (+) 258 WP_409344871.1 hypothetical protein -
  ACKGJP_RS06590 (ACKGJP_06590) - 1561234..1561677 (+) 444 WP_409344872.1 OsmC family protein -
  ACKGJP_RS06595 (ACKGJP_06595) - 1561981..1563531 (+) 1551 WP_409344873.1 helix-turn-helix domain-containing protein -
  ACKGJP_RS06600 (ACKGJP_06600) - 1563645..1564208 (+) 564 WP_409344874.1 nitroreductase -
  ACKGJP_RS06605 (ACKGJP_06605) ceuB 1564276..1565229 (+) 954 WP_409344875.1 ABC transporter permease Machinery gene
  ACKGJP_RS06610 (ACKGJP_06610) - 1565219..1566169 (+) 951 WP_409344876.1 iron chelate uptake ABC transporter family permease subunit -
  ACKGJP_RS06615 (ACKGJP_06615) - 1566163..1566921 (+) 759 WP_409344877.1 ABC transporter ATP-binding protein -
  ACKGJP_RS06620 (ACKGJP_06620) - 1566972..1567961 (+) 990 WP_409344878.1 siderophore ABC transporter substrate-binding protein -
  ACKGJP_RS06625 (ACKGJP_06625) - 1568126..1568905 (-) 780 WP_409344879.1 Cof-type HAD-IIB family hydrolase -
  ACKGJP_RS06630 (ACKGJP_06630) ytxC 1569130..1570050 (+) 921 WP_409344880.1 sporulation protein YtxC -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35109.45 Da        Isoelectric Point: 10.3167

>NTDB_id=1079882 ACKGJP_RS06605 WP_409344875.1 1564276..1565229(+) (ceuB) [Paenibacillus sp. MBLB4367]
MKKRYLIAALILLSVASLFIGVKNISPRDMFHLSEEQMDILTISRIPRLISILIAGVSMSIAGLIMQQLTRNKFVSPSTA
GTMDSARFGVLVAMLLFTSASPMQKMIVAFVFALAGTWLFMKILDKIKFKDTIFIPLVGLMFGNVVGSITTFFAYRKDLI
QNISSWLQGDFSMILKGRYELLYISIPLMIVAYLYANRFTIAGMGEDFSVNLGLKYRQVVNIGLVIVAMVTAVVLLTVGM
IPFLGLIIPNIVTIYQGDHLKKSLAHTALLGAIFVLACDIFGRVIIFPYEVPIGLTVGVFGSAIFLYLLMRRKAHES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1079882 ACKGJP_RS06605 WP_409344875.1 1564276..1565229(+) (ceuB) [Paenibacillus sp. MBLB4367]
ATGAAAAAAAGATATTTGATCGCGGCGCTTATTCTCCTGTCCGTCGCATCCTTGTTTATCGGCGTGAAAAACATTTCGCC
CCGCGATATGTTTCACTTGAGCGAAGAGCAGATGGATATTTTGACGATCAGCCGCATCCCGCGTTTGATCAGCATCCTCA
TCGCCGGGGTGAGCATGAGCATTGCGGGTCTCATCATGCAACAGCTGACGCGCAACAAATTCGTATCCCCGTCGACGGCC
GGAACGATGGATTCGGCCCGGTTCGGCGTGCTCGTCGCCATGCTCCTATTCACGTCGGCCAGCCCGATGCAGAAGATGAT
CGTCGCGTTCGTATTCGCGCTCGCCGGCACCTGGCTGTTCATGAAAATATTGGACAAAATCAAGTTCAAGGATACGATTT
TCATTCCGTTGGTCGGACTGATGTTCGGCAACGTCGTCGGTTCGATCACGACCTTCTTCGCTTACCGGAAGGACTTGATC
CAGAACATTTCATCTTGGCTGCAGGGCGATTTCTCGATGATTCTCAAAGGACGCTACGAGCTGCTGTACATCAGCATTCC
GCTCATGATCGTCGCTTACCTGTACGCGAACCGGTTCACGATTGCCGGAATGGGGGAGGATTTCTCCGTCAACCTGGGGC
TGAAGTACCGGCAGGTCGTCAATATCGGCCTCGTCATCGTGGCGATGGTAACCGCCGTCGTGCTGCTGACCGTAGGCATG
ATTCCGTTCCTCGGGCTGATCATCCCGAATATCGTGACGATTTATCAGGGCGACCATCTGAAGAAGAGCTTGGCGCATAC
GGCGCTGCTCGGGGCGATCTTCGTGCTGGCTTGCGACATTTTTGGCCGCGTGATCATTTTTCCTTACGAGGTTCCGATCG
GACTAACCGTAGGCGTATTCGGCAGCGCGATCTTTCTTTATTTGTTGATGAGGAGAAAGGCACATGAATCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.633

98.738

0.539

Multiple sequence alignment