Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACKUBV_RS14490 Genome accession   NZ_CP176357
Coordinates   3043235..3043753 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain AG1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3038235..3048753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUBV_RS14480 (ACKUBV_14480) gshA 3040970..3042538 (+) 1569 WP_029800956.1 glutamate--cysteine ligase -
  ACKUBV_RS14485 (ACKUBV_14485) - 3042563..3043168 (+) 606 WP_175423209.1 hypothetical protein -
  ACKUBV_RS14490 (ACKUBV_14490) luxS 3043235..3043753 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  ACKUBV_RS14495 (ACKUBV_14495) - 3043815..3045095 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  ACKUBV_RS14500 (ACKUBV_14500) - 3045221..3046015 (-) 795 WP_005462565.1 cytochrome C assembly family protein -
  ACKUBV_RS14505 (ACKUBV_14505) ffh 3046228..3047610 (+) 1383 WP_005462555.1 signal recognition particle protein -
  ACKUBV_RS14510 (ACKUBV_14510) rpsP 3047820..3048068 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  ACKUBV_RS14515 (ACKUBV_14515) rimM 3048097..3048645 (+) 549 WP_047123098.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=1079730 ACKUBV_RS14490 WP_005462534.1 3043235..3043753(+) (luxS) [Vibrio parahaemolyticus strain AG1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1079730 ACKUBV_RS14490 WP_005462534.1 3043235..3043753(+) (luxS) [Vibrio parahaemolyticus strain AG1]
ATGCCTTTACTCGATAGCTTCACAGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCCAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCTGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment