Detailed information NTG1079727

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACKUBV_RS14360
• Genome accession: NZ_CP176357
• Coordinates: 3020650..3021639 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain AG1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3015650..3026639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKUBV_RS14325 (ACKUBV_14325)	ftsB	3015658..3015939 (+)	282	WP_005455577.1	cell division protein FtsB	-
ACKUBV_RS14330 (ACKUBV_14330)	ispD	3015941..3016645 (+)	705	WP_069536395.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACKUBV_RS14335 (ACKUBV_14335)	ispF	3016663..3017139 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACKUBV_RS14340 (ACKUBV_14340)	truD	3017186..3018229 (+)	1044	WP_069536394.1	tRNA pseudouridine(13) synthase TruD	-
ACKUBV_RS14345 (ACKUBV_14345)	surE	3018229..3019005 (+)	777	WP_042762073.1	5'/3'-nucleotidase SurE	-
ACKUBV_RS14350 (ACKUBV_14350)	-	3019005..3019631 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACKUBV_RS14355 (ACKUBV_14355)	-	3019646..3020569 (+)	924	WP_069536393.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACKUBV_RS14360 (ACKUBV_14360)	rpoS	3020650..3021639 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
ACKUBV_RS14365 (ACKUBV_14365)	mutS	3021718..3024279 (-)	2562	WP_069536392.1	DNA mismatch repair protein MutS	-
ACKUBV_RS14370 (ACKUBV_14370)	pncC	3024364..3024846 (+)	483	WP_025505116.1	nicotinamide-nucleotide amidase	-
ACKUBV_RS14375 (ACKUBV_14375)	recA	3025047..3026090 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=1079727 ACKUBV_RS14360 WP_005478537.1 3020650..3021639(+) (rpoS) [Vibrio parahaemolyticus strain AG1]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=1079727 ACKUBV_RS14360 WP_005478537.1 3020650..3021639(+) (rpoS) [Vibrio parahaemolyticus strain AG1]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851