Detailed information NTG1079709

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACKUBV_RS10190
• Genome accession: NZ_CP176357
• Coordinates: 2166644..2167690 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain AG1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2161644..2172690

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKUBV_RS10170 (ACKUBV_10170)	rplC	2162217..2162846 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
ACKUBV_RS10175 (ACKUBV_10175)	rpsJ	2162861..2163172 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
ACKUBV_RS10180 (ACKUBV_10180)	rpmE	2163630..2163851 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
ACKUBV_RS10185 (ACKUBV_10185)	priA	2164146..2166350 (+)	2205	WP_140201821.1	primosomal protein N'	-
ACKUBV_RS10190 (ACKUBV_10190)	cytR	2166644..2167690 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
ACKUBV_RS10195 (ACKUBV_10195)	ftsN	2167867..2168412 (+)	546	WP_005481405.1	cell division protein FtsN	-
ACKUBV_RS10200 (ACKUBV_10200)	hslV	2168577..2169128 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
ACKUBV_RS10205 (ACKUBV_10205)	hslU	2169152..2170483 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
ACKUBV_RS10210 (ACKUBV_10210)	-	2170898..2171122 (-)	225	WP_024703419.1	hypothetical protein	-
ACKUBV_RS10215 (ACKUBV_10215)	-	2171282..2171431 (-)	150	WP_023624903.1	AlpA family phage regulatory protein	-
ACKUBV_RS10220 (ACKUBV_10220)	radC	2171602..2172075 (+)	474	WP_042771704.1	RadC family protein	-
ACKUBV_RS10225 (ACKUBV_10225)	-	2172072..2172503 (+)	432	WP_024703421.1	DUF2787 family protein	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=1079709 ACKUBV_RS10190 WP_254894148.1 2166644..2167690(+) (cytR) [Vibrio parahaemolyticus strain AG1]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=1079709 ACKUBV_RS10190 WP_254894148.1 2166644..2167690(+) (cytR) [Vibrio parahaemolyticus strain AG1]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATTTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871