Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACKUBV_RS05175 Genome accession   NZ_CP176357
Coordinates   1074147..1075568 (+) Length   473 a.a.
NCBI ID   WP_069535688.1    Uniprot ID   A0AA47JIN0
Organism   Vibrio parahaemolyticus strain AG1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1069147..1080568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUBV_RS05155 (ACKUBV_05155) - 1069206..1069958 (-) 753 WP_042780724.1 adenosylcobinamide-GDP ribazoletransferase -
  ACKUBV_RS05160 (ACKUBV_05160) cobT 1070003..1071046 (-) 1044 WP_069535685.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ACKUBV_RS05165 (ACKUBV_05165) - 1071730..1072425 (+) 696 WP_069535686.1 NAD(P)H-binding protein -
  ACKUBV_RS05170 (ACKUBV_05170) - 1072618..1073991 (+) 1374 WP_069535687.1 L-cystine transporter -
  ACKUBV_RS05175 (ACKUBV_05175) sbcB 1074147..1075568 (+) 1422 WP_069535688.1 exodeoxyribonuclease I Machinery gene
  ACKUBV_RS05180 (ACKUBV_05180) - 1075624..1075998 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  ACKUBV_RS05185 (ACKUBV_05185) - 1076000..1076677 (+) 678 WP_005454891.1 LrgB family protein -
  ACKUBV_RS05190 (ACKUBV_05190) cdd 1077042..1077929 (+) 888 WP_015296604.1 cytidine deaminase -
  ACKUBV_RS05195 (ACKUBV_05195) purT 1078077..1079252 (+) 1176 WP_029823377.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACKUBV_RS05200 (ACKUBV_05200) - 1079354..1080004 (-) 651 WP_005480776.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54614.96 Da        Isoelectric Point: 5.0409

>NTDB_id=1079699 ACKUBV_RS05175 WP_069535688.1 1074147..1075568(+) (sbcB) [Vibrio parahaemolyticus strain AG1]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGINRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1079699 ACKUBV_RS05175 WP_069535688.1 1074147..1075568(+) (sbcB) [Vibrio parahaemolyticus strain AG1]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGTCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTAATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment