Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACKPXQ_RS10565 Genome accession   NZ_CP176038
Coordinates   2190509..2191117 (+) Length   202 a.a.
NCBI ID   WP_029973656.1    Uniprot ID   A0AAP3YAZ1
Organism   Bacillus velezensis strain A4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2185509..2196117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPXQ_RS10525 (ACKPXQ_10525) - 2186529..2187035 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  ACKPXQ_RS10530 (ACKPXQ_10530) - 2187174..2187587 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  ACKPXQ_RS10535 (ACKPXQ_10535) - 2187617..2188084 (-) 468 WP_017418018.1 YppG family protein -
  ACKPXQ_RS10540 (ACKPXQ_10540) - 2188271..2188453 (+) 183 WP_003153532.1 YppF family protein -
  ACKPXQ_RS10545 (ACKPXQ_10545) - 2188492..2188860 (-) 369 WP_017418019.1 YppE family protein -
  ACKPXQ_RS10550 (ACKPXQ_10550) - 2188906..2189151 (-) 246 WP_014418233.1 DUF5446 family protein -
  ACKPXQ_RS10555 (ACKPXQ_10555) sspM 2189357..2189461 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  ACKPXQ_RS10560 (ACKPXQ_10560) - 2189505..2190467 (-) 963 WP_182071783.1 DUF2515 domain-containing protein -
  ACKPXQ_RS10565 (ACKPXQ_10565) recU 2190509..2191117 (+) 609 WP_029973656.1 Holliday junction resolvase RecU Machinery gene
  ACKPXQ_RS10570 (ACKPXQ_10570) - 2191156..2193933 (+) 2778 WP_182071785.1 PBP1A family penicillin-binding protein -
  ACKPXQ_RS10575 (ACKPXQ_10575) - 2194011..2194502 (-) 492 WP_065180548.1 YpoC family protein -
  ACKPXQ_RS10580 (ACKPXQ_10580) nth 2194499..2195158 (-) 660 WP_007612187.1 endonuclease III -
  ACKPXQ_RS10585 (ACKPXQ_10585) dnaD 2195177..2195875 (-) 699 WP_017418023.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=1079513 ACKPXQ_RS10565 WP_029973656.1 2190509..2191117(+) (recU) [Bacillus velezensis strain A4]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1079513 ACKPXQ_RS10565 WP_029973656.1 2190509..2191117(+) (recU) [Bacillus velezensis strain A4]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment