Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACKPXQ_RS07225 Genome accession   NZ_CP176038
Coordinates   1394406..1395002 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389406..1400002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPXQ_RS07195 (ACKPXQ_07195) - 1389619..1390075 (+) 457 Protein_1358 flavodoxin -
  ACKPXQ_RS07200 (ACKPXQ_07200) dapD 1390157..1390867 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ACKPXQ_RS07205 (ACKPXQ_07205) - 1390938..1392062 (+) 1125 WP_017417680.1 N-acetyldiaminopimelate deacetylase -
  ACKPXQ_RS07210 (ACKPXQ_07210) - 1392123..1392368 (+) 246 WP_003154596.1 YkuS family protein -
  ACKPXQ_RS07215 (ACKPXQ_07215) - 1392402..1393208 (-) 807 WP_021493755.1 mechanosensitive ion channel family protein -
  ACKPXQ_RS07220 (ACKPXQ_07220) - 1393496..1393954 (+) 459 WP_025649508.1 TlpA disulfide reductase family protein -
  ACKPXQ_RS07225 (ACKPXQ_07225) rok 1394406..1395002 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  ACKPXQ_RS07230 (ACKPXQ_07230) - 1395023..1396015 (-) 993 WP_182072655.1 sporulation protein -
  ACKPXQ_RS07235 (ACKPXQ_07235) - 1396161..1396763 (+) 603 WP_014417620.1 molybdenum cofactor guanylyltransferase -
  ACKPXQ_RS07240 (ACKPXQ_07240) - 1396815..1397834 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  ACKPXQ_RS07245 (ACKPXQ_07245) glp 1397852..1399144 (+) 1293 WP_095271781.1 gephyrin-like molybdotransferase Glp -
  ACKPXQ_RS07250 (ACKPXQ_07250) mobB 1399105..1399626 (+) 522 WP_029973679.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=1079506 ACKPXQ_RS07225 WP_003154591.1 1394406..1395002(+) (rok) [Bacillus velezensis strain A4]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1079506 ACKPXQ_RS07225 WP_003154591.1 1394406..1395002(+) (rok) [Bacillus velezensis strain A4]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCGGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment