Detailed information NTG1079459

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACKN8U_RS05575
• Genome accession: NZ_CP176035
• Coordinates: 1185798..1186805 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain L2181
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1180798..1191805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKN8U_RS05540 (ACKN8U_05540)	-	1180984..1181415 (-)	432	WP_024703421.1	DUF2787 family protein	-
ACKN8U_RS05545 (ACKN8U_05545)	radC	1181412..1181885 (-)	474	WP_042771704.1	RadC family protein	-
ACKN8U_RS05550 (ACKN8U_05550)	-	1182056..1182205 (+)	150	WP_023624903.1	AlpA family phage regulatory protein	-
ACKN8U_RS05555 (ACKN8U_05555)	-	1182365..1182589 (+)	225	WP_024703419.1	hypothetical protein	-
ACKN8U_RS05560 (ACKN8U_05560)	hslU	1183005..1184336 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
ACKN8U_RS05565 (ACKN8U_05565)	hslV	1184360..1184911 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
ACKN8U_RS05570 (ACKN8U_05570)	ftsN	1185076..1185621 (-)	546	WP_005481405.1	cell division protein FtsN	-
ACKN8U_RS05575 (ACKN8U_05575)	cytR	1185798..1186805 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
ACKN8U_RS05580 (ACKN8U_05580)	priA	1187138..1189342 (-)	2205	WP_140201821.1	primosomal protein N'	-
ACKN8U_RS05585 (ACKN8U_05585)	rpmE	1189637..1189858 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
ACKN8U_RS05590 (ACKN8U_05590)	rpsJ	1190316..1190627 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
ACKN8U_RS05595 (ACKN8U_05595)	rplC	1190642..1191271 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=1079459 ACKN8U_RS05575 WP_005481416.1 1185798..1186805(-) (cytR) [Vibrio parahaemolyticus strain L2181]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=1079459 ACKN8U_RS05575 WP_005481416.1 1185798..1186805(-) (cytR) [Vibrio parahaemolyticus strain L2181]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904