Detailed information NTG1079440

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACKN8U_RS01265
• Genome accession: NZ_CP176035
• Coordinates: 285017..286006 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain L2181
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 280017..291006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKN8U_RS01250 (ACKN8U_01250)	recA	280565..281608 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
ACKN8U_RS01255 (ACKN8U_01255)	pncC	281809..282291 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
ACKN8U_RS01260 (ACKN8U_01260)	mutS	282376..284937 (+)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
ACKN8U_RS01265 (ACKN8U_01265)	rpoS	285017..286006 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
ACKN8U_RS01270 (ACKN8U_01270)	-	286087..287010 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACKN8U_RS01275 (ACKN8U_01275)	-	287025..287651 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACKN8U_RS01280 (ACKN8U_01280)	surE	287651..288427 (-)	777	WP_025536693.1	5'/3'-nucleotidase SurE	-
ACKN8U_RS01285 (ACKN8U_01285)	truD	288427..289470 (-)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
ACKN8U_RS01290 (ACKN8U_01290)	ispF	289517..289993 (-)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACKN8U_RS01295 (ACKN8U_01295)	ispD	290011..290715 (-)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACKN8U_RS01300 (ACKN8U_01300)	ftsB	290717..290998 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=1079440 ACKN8U_RS01265 WP_005478537.1 285017..286006(-) (rpoS) [Vibrio parahaemolyticus strain L2181]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=1079440 ACKN8U_RS01265 WP_005478537.1 285017..286006(-) (rpoS) [Vibrio parahaemolyticus strain L2181]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACTCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851