Detailed information NTG1079420

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACKN8R_RS15045
• Genome accession: NZ_CP176031
• Coordinates: 3235058..3236047 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain L2171
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3230058..3241047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKN8R_RS15030 (ACKN8R_15035)	recA	3230606..3231649 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
ACKN8R_RS15035 (ACKN8R_15040)	pncC	3231850..3232332 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
ACKN8R_RS15040 (ACKN8R_15045)	mutS	3232417..3234978 (+)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
ACKN8R_RS15045 (ACKN8R_15050)	rpoS	3235058..3236047 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
ACKN8R_RS15050 (ACKN8R_15055)	-	3236128..3237051 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACKN8R_RS15055 (ACKN8R_15060)	-	3237066..3237692 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACKN8R_RS15060 (ACKN8R_15065)	surE	3237692..3238468 (-)	777	WP_025536693.1	5'/3'-nucleotidase SurE	-
ACKN8R_RS15065 (ACKN8R_15070)	truD	3238468..3239511 (-)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
ACKN8R_RS15070 (ACKN8R_15075)	ispF	3239558..3240034 (-)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACKN8R_RS15075 (ACKN8R_15080)	ispD	3240052..3240756 (-)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACKN8R_RS15080 (ACKN8R_15085)	ftsB	3240758..3241039 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=1079420 ACKN8R_RS15045 WP_005478537.1 3235058..3236047(-) (rpoS) [Vibrio parahaemolyticus strain L2171]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=1079420 ACKN8R_RS15045 WP_005478537.1 3235058..3236047(-) (rpoS) [Vibrio parahaemolyticus strain L2171]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACTCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851