Detailed information NTG1079398

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACKN8R_RS03190
• Genome accession: NZ_CP176031
• Coordinates: 668867..669913 (-)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain L2171
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 663867..674913

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKN8R_RS03155 (ACKN8R_03155)	-	664053..664484 (-)	432	WP_024703421.1	DUF2787 family protein	-
ACKN8R_RS03160 (ACKN8R_03160)	radC	664481..664954 (-)	474	WP_042771704.1	RadC family protein	-
ACKN8R_RS03165 (ACKN8R_03165)	-	665125..665274 (+)	150	WP_023624903.1	AlpA family phage regulatory protein	-
ACKN8R_RS03170 (ACKN8R_03170)	-	665434..665658 (+)	225	WP_024703419.1	hypothetical protein	-
ACKN8R_RS03175 (ACKN8R_03175)	hslU	666074..667405 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
ACKN8R_RS03180 (ACKN8R_03180)	hslV	667429..667980 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
ACKN8R_RS03185 (ACKN8R_03185)	ftsN	668145..668690 (-)	546	WP_005481405.1	cell division protein FtsN	-
ACKN8R_RS03190 (ACKN8R_03190)	cytR	668867..669913 (-)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
ACKN8R_RS03195 (ACKN8R_03195)	priA	670207..672411 (-)	2205	WP_140201821.1	primosomal protein N'	-
ACKN8R_RS03200 (ACKN8R_03200)	rpmE	672706..672927 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
ACKN8R_RS03205 (ACKN8R_03205)	rpsJ	673385..673696 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
ACKN8R_RS03210 (ACKN8R_03210)	rplC	673711..674340 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=1079398 ACKN8R_RS03190 WP_254894148.1 668867..669913(-) (cytR) [Vibrio parahaemolyticus strain L2171]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=1079398 ACKN8R_RS03190 WP_254894148.1 668867..669913(-) (cytR) [Vibrio parahaemolyticus strain L2171]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATTTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871