Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACKEGZ_RS04480 Genome accession   NZ_CP175957
Coordinates   947809..949578 (-) Length   589 a.a.
NCBI ID   WP_229578695.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RAf490     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 942809..954578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKEGZ_RS04460 (ACKEGZ_04460) dinB 942978..944060 (-) 1083 WP_229578694.1 DNA polymerase IV -
  ACKEGZ_RS04465 (ACKEGZ_04465) - 944146..944916 (-) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  ACKEGZ_RS04470 (ACKEGZ_04470) - 944940..946952 (-) 2013 WP_004918229.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  ACKEGZ_RS04475 (ACKEGZ_04475) - 947017..947685 (-) 669 WP_004918227.1 succinate dehydrogenase cytochrome b subunit -
  ACKEGZ_RS04480 (ACKEGZ_04480) comEC 947809..949578 (-) 1770 WP_229578695.1 ComEC/Rec2 family competence protein Machinery gene
  ACKEGZ_RS04485 (ACKEGZ_04485) - 949683..950105 (-) 423 WP_409034372.1 hypothetical protein -
  ACKEGZ_RS04490 (ACKEGZ_04490) - 950105..951733 (-) 1629 WP_004918222.1 acyl-CoA carboxylase subunit beta -
  ACKEGZ_RS04495 (ACKEGZ_04495) - 951838..953031 (-) 1194 WP_004918219.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 68697.05 Da        Isoelectric Point: 10.0234

>NTDB_id=1079267 ACKEGZ_RS04480 WP_229578695.1 947809..949578(-) (comEC) [Riemerella anatipestifer strain RAf490]
MKKQILFSLFISFSLGVFLQDLNGFSWQQLNLIATLGVISLGLIWLKVDWLVRGRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFHQNQPFKAVLSAPKDLEELDYKHYYQSQLSLYPLESSKNNYQFDYAKYQ
ARKAVYYKAYAKDLHKAPKSELTFSEKMKQWRLELLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAETNTNFRRSGLTHV
LAISGSHIAIIFGVIYMLLSLTVPAKFRTGVILFSLVLIWVFAWFIGWGSSVVRSCIMLTVYFGFVLLQRKPQVLDALAL
AGLGILMVDTQELFSVGFQLSFSAVLGIYWFNKPIIRLFPNPRNKIQKLLLYTFTMSTAAQLGTMPIVIYYFHQYSAWSI
LANLVVLPLMEFVIILSFLMTIVFGLGVYWSWLSFAYDWLIKALLWLIGFFGKIELGYFQDIPLSVWEMGVLAVRLYFLR
EILVRFRWRGFMKLMFSVLLFFGIKMGLDVRAYHDKEARWHNHYHTKVFSVLDKGKVYFWVSDKDNLEVLESYLIKPYVI
SKRAESYKVKMMSEEINEVIFNGKRYPSQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=1079267 ACKEGZ_RS04480 WP_229578695.1 947809..949578(-) (comEC) [Riemerella anatipestifer strain RAf490]
GTGAAAAAGCAAATTCTCTTTAGCCTCTTTATAAGTTTTTCATTAGGTGTCTTTTTGCAAGACCTTAATGGGTTCTCGTG
GCAACAGCTCAATCTTATAGCTACATTAGGAGTTATTAGCCTTGGGTTAATTTGGTTAAAAGTGGATTGGTTAGTTCGGG
GCAGAATATGGTTACTTAATATCTTTTTTCTTTGTTTTGGGGTATTTACTCATTACCTTAATTCGGAAAAATCAGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAACTTGTTTTTAAAATTGAACAAAAGCTAAATTCAACGGCTAAAAATAAACGCTATGA
AATAACAGCATTTCATCAAAATCAACCTTTTAAAGCAGTTTTATCTGCGCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTACTATCAATCTCAACTTAGTTTATATCCGTTGGAGTCTTCCAAGAATAATTACCAGTTTGATTATGCCAAATATCAA
GCGAGGAAAGCTGTTTATTATAAGGCTTATGCCAAAGATTTACACAAAGCGCCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACAATGGCGACTGGAACTCCTTAGCAATATAGATAAAAACGAAAAACTTTCACAACAAACTAGAGCTTTCCTAA
AAGGAATTGTTTTAGCTGATAGAACGGAGGTAGATGCGGAAACTAATACTAATTTTAGGAGAAGTGGTTTAACGCATGTT
TTAGCCATTTCTGGGTCGCATATTGCAATTATCTTTGGGGTTATCTATATGCTACTGAGTTTGACTGTGCCAGCAAAATT
TAGGACAGGTGTAATATTGTTTAGTTTGGTGTTAATTTGGGTTTTTGCTTGGTTTATCGGTTGGGGGAGTTCTGTTGTTA
GGTCTTGTATTATGCTCACTGTTTATTTTGGTTTTGTTCTTTTGCAAAGAAAACCTCAAGTTTTAGACGCTTTAGCCTTA
GCAGGGCTGGGTATTCTGATGGTAGATACACAAGAACTATTTTCAGTAGGGTTTCAGTTGAGTTTTTCTGCGGTGTTGGG
GATTTATTGGTTTAATAAACCTATCATTCGTCTTTTTCCAAATCCTAGAAACAAAATTCAAAAACTATTACTTTATACTT
TTACAATGTCTACAGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCGGCGTGGTCTATT
TTGGCTAATCTTGTAGTACTTCCTTTAATGGAATTTGTGATTATACTATCGTTTTTAATGACAATCGTTTTTGGTTTAGG
AGTTTATTGGAGTTGGTTATCTTTTGCTTATGATTGGCTAATTAAAGCCTTGCTATGGCTGATAGGCTTCTTTGGTAAAA
TAGAGTTAGGGTATTTTCAAGATATACCGTTGAGTGTTTGGGAGATGGGAGTTTTGGCGGTAAGGCTTTATTTTCTAAGA
GAAATATTGGTTCGGTTTAGATGGAGAGGTTTTATGAAGTTGATGTTTTCTGTACTTTTATTTTTCGGGATTAAAATGGG
GCTAGATGTTAGAGCTTATCACGATAAAGAAGCGAGGTGGCATAACCATTATCACACTAAGGTATTTTCTGTTTTGGATA
AAGGAAAAGTGTATTTTTGGGTGTCAGATAAAGACAATTTAGAAGTGTTAGAAAGTTATCTCATAAAACCTTATGTGATT
TCTAAAAGAGCTGAAAGCTATAAAGTAAAGATGATGTCTGAAGAAATAAATGAGGTTATTTTTAATGGAAAAAGATATCC
GTCCCAATAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(216-476)

Domain of unknown function (DUF4131) (DUF4131)

(30-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

89.474

100

0.895

Multiple sequence alignment