Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACFLKC_RS04885 Genome accession   NZ_CP175916
Coordinates   1052763..1053716 (+) Length   317 a.a.
NCBI ID   WP_409069560.1    Uniprot ID   -
Organism   Clostridium sp. FAM 27665     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1047763..1058716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFLKC_RS04860 (ACFLKC_04860) - 1048434..1048871 (-) 438 WP_409069556.1 GNAT family N-acetyltransferase -
  ACFLKC_RS04865 (ACFLKC_04865) - 1049389..1050165 (+) 777 WP_409069557.1 D-alanyl-D-alanine carboxypeptidase family protein -
  ACFLKC_RS04870 (ACFLKC_04870) tlp 1050471..1050698 (+) 228 WP_409069558.1 small acid-soluble spore protein Tlp -
  ACFLKC_RS04875 (ACFLKC_04875) - 1050839..1051525 (-) 687 WP_409069559.1 DNA alkylation repair protein -
  ACFLKC_RS04880 (ACFLKC_04880) - 1051760..1052518 (-) 759 WP_040109434.1 AraC family transcriptional regulator -
  ACFLKC_RS04885 (ACFLKC_04885) ceuB 1052763..1053716 (+) 954 WP_409069560.1 ABC transporter permease Machinery gene
  ACFLKC_RS04890 (ACFLKC_04890) - 1053706..1054656 (+) 951 WP_409069561.1 iron chelate uptake ABC transporter family permease subunit -
  ACFLKC_RS04895 (ACFLKC_04895) - 1054653..1055408 (+) 756 WP_409069562.1 ABC transporter ATP-binding protein -
  ACFLKC_RS04900 (ACFLKC_04900) - 1055482..1056426 (+) 945 WP_409069563.1 siderophore ABC transporter substrate-binding protein -
  ACFLKC_RS04905 (ACFLKC_04905) - 1056628..1057629 (+) 1002 WP_409069564.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35029.48 Da        Isoelectric Point: 10.1754

>NTDB_id=1079123 ACFLKC_RS04885 WP_409069560.1 1052763..1053716(+) (ceuB) [Clostridium sp. FAM 27665]
MKKRYLIFTLIILSICSIFIGVKDISFVDIFKSDDVKLKVLLISRIPRLISIIIVGATMSIAGLIMQQISRNKFVSPDTA
STVDSAKLGILVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKAKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYLSLPLVVISFIYANKFTVAGMGEDFSKNLGVNYNRIINMGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSIWITALLGAVFLLGCDILGRLIIYPYEISIGLVVGVIGSIVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1079123 ACFLKC_RS04885 WP_409069560.1 1052763..1053716(+) (ceuB) [Clostridium sp. FAM 27665]
ATGAAAAAGAGATATTTAATTTTCACATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGTTT
TGTAGATATATTTAAATCAGATGATGTTAAGCTTAAGGTATTATTAATTAGTAGAATCCCGAGACTTATAAGTATTATTA
TAGTAGGGGCTACTATGAGTATAGCAGGACTTATTATGCAGCAGATAAGTCGGAATAAATTTGTATCCCCAGATACAGCT
TCAACTGTAGATAGTGCAAAGCTTGGTATTTTGGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTGGGCACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGCTAAAAATTCTATAT
TTATACCCCTTGTTGGTATAATGCTTGGAAATATTATAGATTCCATAACCACGTTTTTCGCATATAAATACAATCTTATT
CAAAGTATCGCATCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGTAATTATGAACTTATATATCTAAGTTTACC
TCTTGTAGTTATATCTTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCTAAGAATTTAGGAG
TTAATTATAATAGAATCATAAATATGGGGCTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGGAAA
ATACCATTTTTAGGTCTTATAGTACCCAATATAGTTACTCTTTATAAAGGAGATAATTTAAAAAATAGTATTTGGATAAC
AGCATTACTTGGAGCAGTATTTCTTTTAGGATGTGATATATTAGGTAGGTTAATTATTTATCCTTATGAAATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGCATAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.161

98.107

0.492

Multiple sequence alignment