Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACJJTF_RS17330 Genome accession   NZ_CP175908
Coordinates   3496189..3497574 (-) Length   461 a.a.
NCBI ID   WP_061890854.1    Uniprot ID   -
Organism   Bacillus velezensis strain SJ22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3491189..3502574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJTF_RS17295 (ACJJTF_17295) flgL 3491364..3492281 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  ACJJTF_RS17300 (ACJJTF_17300) flgK 3492293..3493810 (-) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  ACJJTF_RS17305 (ACJJTF_17305) - 3493826..3494308 (-) 483 WP_015418332.1 flagellar protein FlgN -
  ACJJTF_RS17310 (ACJJTF_17310) flgM 3494323..3494589 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJJTF_RS17315 (ACJJTF_17315) - 3494659..3495078 (-) 420 WP_015418333.1 TIGR03826 family flagellar region protein -
  ACJJTF_RS17320 (ACJJTF_17320) comFC 3495152..3495841 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  ACJJTF_RS17325 (ACJJTF_17325) - 3495847..3496131 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACJJTF_RS17330 (ACJJTF_17330) comFA 3496189..3497574 (-) 1386 WP_061890854.1 DEAD/DEAH box helicase Machinery gene
  ACJJTF_RS17335 (ACJJTF_17335) - 3497682..3498530 (-) 849 WP_003151387.1 DegV family protein -
  ACJJTF_RS17340 (ACJJTF_17340) degU 3498628..3499317 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACJJTF_RS17345 (ACJJTF_17345) degS 3499394..3500557 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACJJTF_RS17350 (ACJJTF_17350) - 3500780..3501427 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52643.06 Da        Isoelectric Point: 10.2278

>NTDB_id=1079090 ACJJTF_RS17330 WP_061890854.1 3496189..3497574(-) (comFA) [Bacillus velezensis strain SJ22]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGHLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1079090 ACJJTF_RS17330 WP_061890854.1 3496189..3497574(-) (comFA) [Bacillus velezensis strain SJ22]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTCTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCACCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTGTTCGTCCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment