Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACJUA3_RS12565 Genome accession   NZ_CP175808
Coordinates   2630835..2631449 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain 27-C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2625835..2636449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJUA3_RS12545 (ACJUA3_12545) - 2626202..2627962 (-) 1761 WP_048216643.1 Lon protease family protein -
  ACJUA3_RS12550 (ACJUA3_12550) matP 2628148..2628600 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  ACJUA3_RS12555 (ACJUA3_12555) ompA 2628692..2629750 (-) 1059 WP_003836839.1 porin OmpA -
  ACJUA3_RS12560 (ACJUA3_12560) sulA 2630108..2630617 (-) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  ACJUA3_RS12565 (ACJUA3_12565) sxy/tfoX 2630835..2631449 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  ACJUA3_RS12570 (ACJUA3_12570) yccS 2631427..2633580 (-) 2154 WP_032941200.1 YccS family putative transporter -
  ACJUA3_RS12575 (ACJUA3_12575) - 2633599..2634045 (-) 447 WP_003035892.1 YccF domain-containing protein -
  ACJUA3_RS12580 (ACJUA3_12580) helD 2634171..2636225 (+) 2055 WP_048233407.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=1079012 ACJUA3_RS12565 WP_003035889.1 2630835..2631449(+) (sxy/tfoX) [Citrobacter freundii strain 27-C]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1079012 ACJUA3_RS12565 WP_003035889.1 2630835..2631449(+) (sxy/tfoX) [Citrobacter freundii strain 27-C]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment