Detailed information NTG1078987

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACKQF3_RS11955
• Genome accession: NZ_CP175806
• Coordinates: 2624566..2625573 (-)
• Length: 335 a.a.
• NCBI ID: WP_033928158.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain N19-2759
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2619566..2630573

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKQF3_RS11945 (ACKQF3_11945)	cysM	2620726..2621613 (+)	888	WP_248451976.1	cysteine synthase CysM	-
ACKQF3_RS11950 (ACKQF3_11950)	mutS	2621881..2624469 (+)	2589	WP_317006829.1	DNA mismatch repair protein MutS	-
ACKQF3_RS11955 (ACKQF3_11955)	rpoS	2624566..2625573 (-)	1008	WP_033928158.1	RNA polymerase sigma factor RpoS	Regulator
ACKQF3_RS11960 (ACKQF3_11960)	nlpD	2625647..2626582 (-)	936	WP_317006830.1	murein hydrolase activator NlpD	-
ACKQF3_RS11965 (ACKQF3_11965)	-	2626582..2627208 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACKQF3_RS11970 (ACKQF3_11970)	surE	2627201..2627953 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
ACKQF3_RS11975 (ACKQF3_11975)	truD	2627955..2629040 (-)	1086	WP_071187180.1	tRNA pseudouridine(13) synthase TruD	-
ACKQF3_RS11980 (ACKQF3_11980)	ispF	2629070..2629546 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACKQF3_RS11985 (ACKQF3_11985)	ispD	2629543..2630241 (-)	699	WP_001061954.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACKQF3_RS11990 (ACKQF3_11990)	ftsB	2630238..2630522 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38531.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=1078987 ACKQF3_RS11955 WP_033928158.1 2624566..2625573(-) (rpoS) [Vibrio cholerae strain N19-2759]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGANEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=1078987 ACKQF3_RS11955 WP_033928158.1 2624566..2625573(-) (rpoS) [Vibrio cholerae strain N19-2759]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAATGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCCGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994