Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACKQF3_RS11815 Genome accession   NZ_CP175806
Coordinates   2598079..2598597 (-) Length   172 a.a.
NCBI ID   WP_001130229.1    Uniprot ID   -
Organism   Vibrio cholerae strain N19-2759     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2593079..2603597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKQF3_RS11790 (ACKQF3_11790) rimM 2593188..2593742 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  ACKQF3_RS11795 (ACKQF3_11795) rpsP 2593770..2594018 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  ACKQF3_RS11800 (ACKQF3_11800) ffh 2594254..2595639 (-) 1386 WP_000462714.1 signal recognition particle protein -
  ACKQF3_RS11805 (ACKQF3_11805) - 2595852..2596646 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  ACKQF3_RS11810 (ACKQF3_11810) - 2596729..2598009 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  ACKQF3_RS11815 (ACKQF3_11815) luxS 2598079..2598597 (-) 519 WP_001130229.1 S-ribosylhomocysteine lyase Regulator
  ACKQF3_RS11820 (ACKQF3_11820) gshA 2598646..2600220 (-) 1575 WP_002051177.1 glutamate--cysteine ligase -
  ACKQF3_RS11825 (ACKQF3_11825) - 2600332..2603187 (-) 2856 WP_187379809.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19108.96 Da        Isoelectric Point: 5.2199

>NTDB_id=1078984 ACKQF3_RS11815 WP_001130229.1 2598079..2598597(-) (luxS) [Vibrio cholerae strain N19-2759]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKVIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1078984 ACKQF3_RS11815 WP_001130229.1 2598079..2598597(-) (luxS) [Vibrio cholerae strain N19-2759]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTGGAAGAAGCCAAAGTGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994

Multiple sequence alignment