Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACKQF3_RS08220 Genome accession   NZ_CP175806
Coordinates   1813110..1814534 (+) Length   474 a.a.
NCBI ID   WP_001183692.1    Uniprot ID   A0A544H367
Organism   Vibrio cholerae strain N19-2759     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808110..1819534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKQF3_RS08200 (ACKQF3_08200) - 1808378..1809163 (-) 786 WP_002051972.1 adenosylcobinamide-GDP ribazoletransferase -
  ACKQF3_RS08205 (ACKQF3_08205) cobT 1809163..1810188 (-) 1026 WP_000887075.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ACKQF3_RS08210 (ACKQF3_08210) msrB 1810799..1811245 (-) 447 WP_032476236.1 peptide-methionine (R)-S-oxide reductase MsrB -
  ACKQF3_RS08215 (ACKQF3_08215) - 1811593..1812966 (+) 1374 WP_000117950.1 L-cystine transporter -
  ACKQF3_RS08220 (ACKQF3_08220) sbcB 1813110..1814534 (+) 1425 WP_001183692.1 exodeoxyribonuclease I Machinery gene
  ACKQF3_RS08225 (ACKQF3_08225) - 1814566..1814940 (+) 375 WP_001927646.1 CidA/LrgA family protein -
  ACKQF3_RS08230 (ACKQF3_08230) - 1814931..1815605 (+) 675 WP_000266237.1 LrgB family protein -
  ACKQF3_RS08235 (ACKQF3_08235) cdd 1815775..1816662 (+) 888 WP_001245905.1 cytidine deaminase -
  ACKQF3_RS08240 (ACKQF3_08240) - 1816821..1817696 (+) 876 WP_317006631.1 AEC family transporter -
  ACKQF3_RS08245 (ACKQF3_08245) purT 1817850..1819025 (+) 1176 WP_000468083.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54500.86 Da        Isoelectric Point: 5.9820

>NTDB_id=1078976 ACKQF3_RS08220 WP_001183692.1 1813110..1814534(+) (sbcB) [Vibrio cholerae strain N19-2759]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1078976 ACKQF3_RS08220 WP_001183692.1 1813110..1814534(+) (sbcB) [Vibrio cholerae strain N19-2759]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATAACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCACGTATTCATGCTGAGCTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATTGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCACACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A544H367

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

99.156

100

0.992

Multiple sequence alignment