Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | ACKQF3_RS01360 | Genome accession | NZ_CP175806 |
| Coordinates | 295334..295918 (+) | Length | 194 a.a. |
| NCBI ID | WP_000902745.1 | Uniprot ID | A0A0H6BVQ2 |
| Organism | Vibrio cholerae strain N19-2759 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 290334..300918
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKQF3_RS01345 (ACKQF3_01345) | oxyR | 290739..291632 (+) | 894 | WP_001025909.1 | DNA-binding transcriptional regulator OxyR | - |
| ACKQF3_RS01350 (ACKQF3_01350) | - | 291708..294185 (-) | 2478 | WP_032482070.1 | penicillin-binding protein 1A | - |
| ACKQF3_RS01355 (ACKQF3_01355) | pilM | 294328..295344 (+) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| ACKQF3_RS01360 (ACKQF3_01360) | pilN | 295334..295918 (+) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| ACKQF3_RS01365 (ACKQF3_01365) | pilO | 295911..296501 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACKQF3_RS01370 (ACKQF3_01370) | pilP | 296491..297009 (+) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| ACKQF3_RS01375 (ACKQF3_01375) | pilQ | 297035..298750 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| ACKQF3_RS01380 (ACKQF3_01380) | aroK | 298937..299461 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| ACKQF3_RS01385 (ACKQF3_01385) | aroB | 299489..300574 (+) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21964.42 Da Isoelectric Point: 9.9503
>NTDB_id=1078960 ACKQF3_RS01360 WP_000902745.1 295334..295918(+) (pilN) [Vibrio cholerae strain N19-2759]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQAGGAHNG
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQAGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=1078960 ACKQF3_RS01360 WP_000902745.1 295334..295918(+) (pilN) [Vibrio cholerae strain N19-2759]
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATTTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTTATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATTTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTTATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
91.237 |
0.552 |