Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACJ9PY_RS17235 Genome accession   NZ_CP175708
Coordinates   3640060..3641775 (-) Length   571 a.a.
NCBI ID   WP_411738628.1    Uniprot ID   -
Organism   Peribacillus sp. S4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3635060..3646775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ9PY_RS17215 (ACJ9PY_17215) - 3635144..3636072 (-) 929 Protein_3342 transposase -
  ACJ9PY_RS17220 (ACJ9PY_17220) - 3636340..3637074 (-) 735 WP_191928966.1 glycerophosphodiester phosphodiesterase -
  ACJ9PY_RS17225 (ACJ9PY_17225) spo0A 3637485..3638276 (-) 792 WP_034308269.1 sporulation transcription factor Spo0A -
  ACJ9PY_RS17230 (ACJ9PY_17230) spoIVB 3638606..3639898 (-) 1293 WP_063575695.1 SpoIVB peptidase -
  ACJ9PY_RS17235 (ACJ9PY_17235) recN 3640060..3641775 (-) 1716 WP_411738628.1 DNA repair protein RecN Machinery gene
  ACJ9PY_RS17240 (ACJ9PY_17240) ahrC 3641798..3642247 (-) 450 WP_034308279.1 transcriptional regulator AhrC/ArgR -
  ACJ9PY_RS17245 (ACJ9PY_17245) - 3642491..3643318 (-) 828 WP_411738629.1 TlyA family RNA methyltransferase -
  ACJ9PY_RS17250 (ACJ9PY_17250) dxs 3643323..3645215 (-) 1893 WP_411738630.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACJ9PY_RS17255 (ACJ9PY_17255) - 3645465..3646358 (-) 894 WP_057278792.1 polyprenyl synthetase family protein -
  ACJ9PY_RS17260 (ACJ9PY_17260) xseB 3646360..3646593 (-) 234 WP_411738631.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64552.48 Da        Isoelectric Point: 5.3596

>NTDB_id=1078754 ACJ9PY_RS17235 WP_411738628.1 3640060..3641775(-) (recN) [Peribacillus sp. S4]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKHSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTHTSVKPLMETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=1078754 ACJ9PY_RS17235 WP_411738628.1 3640060..3641775(-) (recN) [Peribacillus sp. S4]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTCTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACAAAGCGGTAAAAGCGTTTG
CAGGGTAAATGGGAAGCTGGTGACGATTTCCACTTTACGTGAGATAGGGCGAACATTGATAGACATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCGCTGCTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGATATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAGTTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGCA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTCGAAGAGGCTGTGTCAAACATCCGGGACCAATTGGACTCTTTGG
ATTATGATACAGAACGTGTGGAATTCATTGAAAGTCGACTTAATGAAATAAATCAATTAAAGCGTAAATACGGACGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCAATTGAAGAAGAAGTCGAAAAGCTGCAAAATAGGGAAACCCATATCGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATCTTATCGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAGGATCTATATATGGAAAAAACAATTTTTGAACCTCATTTCCTT
CAGACAGCCTATACTTTCGATGAATTGTCAGATAGGGGCATTAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAACTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAGCATCAAGGCATAACATCCATTATATTTGATGAAGTGGATACAGGTGTGAGCGGACGGGTTGCA
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTGTGCATATCCCATTTGCCACAGGTGGCAGC
CATGGCGGATACTCACCTTTTCATAGCGAAAAATGTCAGGGCTGGACGCACGCATACCTCGGTCAAGCCGCTAATGGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCGGGAGTAGAGATTACGGACTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.764

100

0.613

Multiple sequence alignment