Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACJ9PY_RS06365 Genome accession   NZ_CP175708
Coordinates   1324779..1326596 (+) Length   605 a.a.
NCBI ID   WP_411739668.1    Uniprot ID   -
Organism   Peribacillus sp. S4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1319779..1331596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ9PY_RS06345 (ACJ9PY_06345) spxA 1320148..1320543 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  ACJ9PY_RS06350 (ACJ9PY_06350) mecA 1321038..1321706 (+) 669 WP_034314498.1 adaptor protein MecA -
  ACJ9PY_RS06355 (ACJ9PY_06355) cls 1321797..1323305 (+) 1509 WP_411739666.1 cardiolipin synthase -
  ACJ9PY_RS06360 (ACJ9PY_06360) - 1323403..1324611 (+) 1209 WP_411739667.1 competence protein CoiA -
  ACJ9PY_RS06365 (ACJ9PY_06365) pepF 1324779..1326596 (+) 1818 WP_411739668.1 oligoendopeptidase F Regulator
  ACJ9PY_RS06370 (ACJ9PY_06370) - 1327522..1328415 (-) 894 WP_411739669.1 ClpXP adapter SpxH family protein -
  ACJ9PY_RS06375 (ACJ9PY_06375) - 1328412..1328816 (-) 405 WP_053534150.1 globin -
  ACJ9PY_RS06380 (ACJ9PY_06380) - 1329050..1329718 (-) 669 WP_411739670.1 lytic transglycosylase domain-containing protein -
  ACJ9PY_RS06385 (ACJ9PY_06385) - 1329741..1330319 (-) 579 WP_268590588.1 CYTH domain-containing protein -
  ACJ9PY_RS06390 (ACJ9PY_06390) - 1330639..1331259 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69794.27 Da        Isoelectric Point: 4.7981

>NTDB_id=1078746 ACJ9PY_RS06365 WP_411739668.1 1324779..1326596(+) (pepF) [Peribacillus sp. S4]
MAQETKTNTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLELDELHMYDLFTPLVKEVKM
KVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYGLNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1078746 ACJ9PY_RS06365 WP_411739668.1 1324779..1326596(+) (pepF) [Peribacillus sp. S4]
ATGGCACAGGAAACAAAAACGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACTTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAGGAAGACCTCAAGAAAGCGGAGGCGCATAAAGGGA
CGTTGGGAGAAAGCGCAGAAAAGCTATTTGCGGCCCTCCAACTTCAAGATGAGGTTTTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCATTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCACAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGACGAAAGTAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGAATTGAAATTATATAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCCTATCAGCAGAG
CAGGAAGAACTATTGGCACAGGCATCAGAAGTACTCGATGCATCGGGTAATACTTTCGGTATGCTTAACAATGCCGATCT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGAAGGTATATCAGATTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTACGGGGAGTTCCGTAATACATTTGCTTCAACA
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCTTTAAGTAA
TAATAACATTCCGGAGACCGTATACGATAATCTCGTTAAAACGGTCAACGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAGGTACTGGAATTAGATGAACTTCATATGTATGATTTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
AAAGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTAGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCTTCGGGGACATACG
GGACGAACCCTTATATTCTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAACATCAGCCATATCCATACGGGAATTATTCAATTTTTGTAGCGGAAGTTGCATCCAC
TTGTAATGAAAACCTGTTGAATGATTATTTACTGAATTCAATCGAAGATGAAAAGAAACGCATCTATTTACTGAACCATT
ACCTGGAAGGCTTCCGTGGCACATTGTTCCGACAAACGATGTTTGCTGAGTTTGAACATACCATTCATTTAAAAGCTCAA
AATGGAGAAGCGTTGACGGCGGATATGCTAACTAAGGAATATTATGGGCTGAACAAGAAATACTTTGGCGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCTCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACTG
GAATCAGTGCAGCAACAGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCCTG
AAATCAGGAAGTTCCGATTATCCGATTGAAGTACTCAAAAAGGCCGGCGTCGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGAACTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498

Multiple sequence alignment