Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACJJVF_RS14550 Genome accession   NZ_CP175682
Coordinates   2996430..2997059 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Z1324PEC0010     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2991430..3002059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJVF_RS14535 helD 2991672..2993726 (-) 2055 WP_000420536.1 DNA helicase IV -
  ACJJVF_RS14540 yccF 2993849..2994295 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACJJVF_RS14545 yccS 2994305..2996467 (+) 2163 WP_000875023.1 YccS family putative transporter -
  ACJJVF_RS14550 sxy/tfoX 2996430..2997059 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACJJVF_RS14555 sulA 2997278..2997787 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACJJVF_RS14560 ompA 2998144..2999196 (+) 1053 WP_001361736.1 porin OmpA -
  ACJJVF_RS14565 matP 2999272..2999724 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACJJVF_RS14570 ycbZ 2999910..3001670 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1078696 ACJJVF_RS14550 WP_000839153.1 2996430..2997059(-) (sxy/tfoX) [Escherichia coli strain Z1324PEC0010]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1078696 ACJJVF_RS14550 WP_000839153.1 2996430..2997059(-) (sxy/tfoX) [Escherichia coli strain Z1324PEC0010]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment