Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACJ229_RS01500 Genome accession   NZ_CP175656
Coordinates   186941..187759 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain UMB001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 181941..192759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ229_RS01485 (ACJ229_01490) pilE 182158..182583 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ACJ229_RS01490 (ACJ229_01495) pilY2 182580..183062 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ACJ229_RS01495 (ACJ229_01500) pilY1 183075..186929 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  ACJ229_RS01500 (ACJ229_01505) pilX 186941..187759 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACJ229_RS01505 (ACJ229_01510) pilW 187756..188757 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  ACJ229_RS01510 (ACJ229_01515) pilV 188758..189318 (-) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  ACJ229_RS01515 (ACJ229_01520) fimU 189312..189785 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACJ229_RS01520 (ACJ229_01525) ispH 189955..190905 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACJ229_RS01525 (ACJ229_01530) gmk 191028..191657 (+) 630 WP_000015937.1 guanylate kinase -
  ACJ229_RS01530 (ACJ229_01535) rpoZ 191730..192008 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACJ229_RS01535 (ACJ229_01540) - 192047..192177 (+) 131 Protein_190 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1078520 ACJ229_RS01500 WP_000149374.1 186941..187759(-) (pilX) [Acinetobacter baumannii strain UMB001]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1078520 ACJ229_RS01500 WP_000149374.1 186941..187759(-) (pilX) [Acinetobacter baumannii strain UMB001]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment