Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACJ23B_RS04250 | Genome accession | NZ_CP175653 |
| Coordinates | 725340..725720 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain NIH1 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 720340..730720
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ23B_RS04220 (ACJ23B_04225) | kdsB | 721243..722004 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ACJ23B_RS04225 (ACJ23B_04230) | - | 722016..722996 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ACJ23B_RS04230 (ACJ23B_04235) | - | 723008..723349 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ACJ23B_RS04235 (ACJ23B_04240) | - | 723367..724140 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ACJ23B_RS04240 (ACJ23B_04245) | - | 724178..724786 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ACJ23B_RS04245 (ACJ23B_04250) | - | 724796..725350 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ACJ23B_RS04250 (ACJ23B_04255) | xcpV | 725340..725720 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ACJ23B_RS04255 (ACJ23B_04260) | xcpW | 725720..726421 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACJ23B_RS04260 (ACJ23B_04265) | gspK | 726421..727380 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ACJ23B_RS04265 (ACJ23B_04270) | - | 727611..728207 (+) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ACJ23B_RS04270 (ACJ23B_04275) | ung | 728258..728971 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ACJ23B_RS04275 (ACJ23B_04280) | - | 728968..730092 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACJ23B_RS04280 (ACJ23B_04285) | tadA | 730099..730602 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1078469 ACJ23B_RS04250 WP_000836911.1 725340..725720(+) (xcpV) [Acinetobacter baumannii strain NIH1]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1078469 ACJ23B_RS04250 WP_000836911.1 725340..725720(+) (xcpV) [Acinetobacter baumannii strain NIH1]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |