Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   ACKFA7_RS17425 Genome accession   NZ_CP175553
Coordinates   3573253..3574398 (+) Length   381 a.a.
NCBI ID   WP_038464359.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3568253..3579398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS17405 (ACKFA7_17405) - 3569150..3569578 (-) 429 WP_032869448.1 DUF1934 domain-containing protein -
  ACKFA7_RS17410 (ACKFA7_17410) - 3569732..3570244 (+) 513 Protein_3375 bacteriocin biosynthesis protein AlbG -
  ACKFA7_RS17415 (ACKFA7_17415) - 3570251..3571627 (-) 1377 WP_038460210.1 YncE family protein -
  ACKFA7_RS17420 (ACKFA7_17420) - 3571667..3573022 (-) 1356 WP_038460212.1 YncE family protein -
  ACKFA7_RS17425 (ACKFA7_17425) rapF 3573253..3574398 (+) 1146 WP_038464359.1 tetratricopeptide repeat protein Regulator
  ACKFA7_RS17430 (ACKFA7_17430) - 3574382..3574501 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  ACKFA7_RS17435 (ACKFA7_17435) - 3574701..3574904 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  ACKFA7_RS17440 (ACKFA7_17440) - 3574918..3575121 (+) 204 WP_007407641.1 hypothetical protein -
  ACKFA7_RS17445 (ACKFA7_17445) - 3575156..3575340 (+) 185 Protein_3382 DUF4177 domain-containing protein -
  ACKFA7_RS17450 (ACKFA7_17450) - 3575527..3575808 (+) 282 WP_007407643.1 hypothetical protein -
  ACKFA7_RS17455 (ACKFA7_17455) - 3575852..3576364 (+) 513 WP_007614439.1 stage II sporulation protein M -
  ACKFA7_RS17460 (ACKFA7_17460) - 3576955..3577173 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  ACKFA7_RS17465 (ACKFA7_17465) speB 3577342..3578214 (-) 873 WP_007614448.1 agmatinase -
  ACKFA7_RS17470 (ACKFA7_17470) speE 3578273..3579103 (-) 831 WP_038464362.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45528.60 Da        Isoelectric Point: 4.6428

>NTDB_id=1078177 ACKFA7_RS17425 WP_038464359.1 3573253..3574398(+) (rapF) [Bacillus amyloliquefaciens strain 4-9-2]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEKAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHDRENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=1078177 ACKFA7_RS17425 WP_038464359.1 3573253..3574398(+) (rapF) [Bacillus amyloliquefaciens strain 4-9-2]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGA
AGGCAGAAGATTCCCTATATATCGCTGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGATAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.053

99.738

0.559

Multiple sequence alignment