Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACKFA7_RS10330 Genome accession   NZ_CP175553
Coordinates   2181821..2182429 (+) Length   202 a.a.
NCBI ID   WP_038460820.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176821..2187429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS10290 (ACKFA7_10290) - 2177841..2178347 (-) 507 WP_007612167.1 PTS glucose transporter subunit IIA -
  ACKFA7_RS10295 (ACKFA7_10295) - 2178486..2178899 (+) 414 WP_007612169.1 Hsp20/alpha crystallin family protein -
  ACKFA7_RS10300 (ACKFA7_10300) - 2178929..2179396 (-) 468 WP_038458949.1 YppG family protein -
  ACKFA7_RS10305 (ACKFA7_10305) - 2179583..2179765 (+) 183 WP_003153532.1 YppF family protein -
  ACKFA7_RS10310 (ACKFA7_10310) - 2179804..2180172 (-) 369 WP_029326132.1 YppE family protein -
  ACKFA7_RS10315 (ACKFA7_10315) - 2180218..2180463 (-) 246 WP_014418233.1 DUF5446 family protein -
  ACKFA7_RS10320 (ACKFA7_10320) sspM 2180669..2180773 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  ACKFA7_RS10325 (ACKFA7_10325) - 2180817..2181779 (-) 963 WP_038458951.1 DUF2515 domain-containing protein -
  ACKFA7_RS10330 (ACKFA7_10330) recU 2181821..2182429 (+) 609 WP_038460820.1 Holliday junction resolvase RecU Machinery gene
  ACKFA7_RS10335 (ACKFA7_10335) - 2182468..2185251 (+) 2784 WP_038458953.1 PBP1A family penicillin-binding protein -
  ACKFA7_RS10340 (ACKFA7_10340) - 2185328..2185819 (-) 492 WP_007612186.1 YpoC family protein -
  ACKFA7_RS10345 (ACKFA7_10345) nth 2185816..2186475 (-) 660 WP_007612187.1 endonuclease III -
  ACKFA7_RS10350 (ACKFA7_10350) dnaD 2186494..2187192 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23652.77 Da        Isoelectric Point: 9.5708

>NTDB_id=1078142 ACKFA7_RS10330 WP_038460820.1 2181821..2182429(+) (recU) [Bacillus amyloliquefaciens strain 4-9-2]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPIQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVKQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1078142 ACKFA7_RS10330 WP_038460820.1 2181821..2182429(+) (recU) [Bacillus amyloliquefaciens strain 4-9-2]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGATCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCATCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACCGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAAAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAAACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment