Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACKFA7_RS06990 Genome accession   NZ_CP175553
Coordinates   1393245..1393529 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388245..1398529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS06970 (ACKFA7_06970) - 1389488..1390396 (+) 909 WP_038457869.1 ketopantoate reductase family protein -
  ACKFA7_RS06975 (ACKFA7_06975) - 1390427..1391659 (-) 1233 WP_038457870.1 aminopeptidase -
  ACKFA7_RS06980 (ACKFA7_06980) - 1391760..1391894 (-) 135 WP_003154559.1 protein YkpC -
  ACKFA7_RS06985 (ACKFA7_06985) mreBH 1391966..1392973 (-) 1008 WP_038460721.1 cell shape-determining protein MreBH -
  ACKFA7_RS06990 (ACKFA7_06990) abrB 1393245..1393529 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACKFA7_RS06995 (ACKFA7_06995) - 1393702..1395006 (+) 1305 WP_032874761.1 ATP-binding protein -
  ACKFA7_RS07000 (ACKFA7_07000) - 1395008..1395835 (+) 828 WP_038457871.1 gamma-glutamylcyclotransferase -
  ACKFA7_RS07005 (ACKFA7_07005) ktrC 1395876..1396541 (+) 666 WP_038457872.1 Ktr system potassium transporter KtrC -
  ACKFA7_RS07010 (ACKFA7_07010) ade 1396690..1398423 (+) 1734 WP_038457873.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=1078136 ACKFA7_RS06990 WP_003154557.1 1393245..1393529(+) (abrB) [Bacillus amyloliquefaciens strain 4-9-2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1078136 ACKFA7_RS06990 WP_003154557.1 1393245..1393529(+) (abrB) [Bacillus amyloliquefaciens strain 4-9-2]
ATGAAATCGATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment