Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACKFA7_RS06780 Genome accession   NZ_CP175553
Coordinates   1356928..1357392 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1351928..1362392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS06760 (ACKFA7_06760) - 1352409..1354229 (+) 1821 WP_038457846.1 PAS domain-containing protein -
  ACKFA7_RS06765 (ACKFA7_06765) - 1354210..1355423 (-) 1214 Protein_1280 aminotransferase A -
  ACKFA7_RS06770 (ACKFA7_06770) - 1355624..1355785 (-) 162 WP_193427903.1 hypothetical protein -
  ACKFA7_RS06775 (ACKFA7_06775) cheV 1355974..1356885 (+) 912 WP_038457848.1 chemotaxis protein CheV -
  ACKFA7_RS06780 (ACKFA7_06780) kre 1356928..1357392 (-) 465 WP_003154622.1 YkyB family protein Regulator
  ACKFA7_RS06785 (ACKFA7_06785) - 1357515..1358807 (-) 1293 WP_038457850.1 MFS transporter -
  ACKFA7_RS06790 (ACKFA7_06790) - 1358884..1359378 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  ACKFA7_RS06795 (ACKFA7_06795) - 1359453..1360316 (-) 864 WP_038457852.1 metallophosphoesterase -
  ACKFA7_RS06800 (ACKFA7_06800) fadH 1360460..1361224 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  ACKFA7_RS06805 (ACKFA7_06805) - 1361345..1361836 (+) 492 WP_038457854.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1078134 ACKFA7_RS06780 WP_003154622.1 1356928..1357392(-) (kre) [Bacillus amyloliquefaciens strain 4-9-2]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1078134 ACKFA7_RS06780 WP_003154622.1 1356928..1357392(-) (kre) [Bacillus amyloliquefaciens strain 4-9-2]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment