Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | ACKFA7_RS00090 | Genome accession | NZ_CP175553 |
| Coordinates | 13264..13554 (-) | Length | 96 a.a. |
| NCBI ID | WP_169510469.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain 4-9-2 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 8264..18554
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKFA7_RS00050 (ACKFA7_00050) | darA | 8281..8610 (+) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
| ACKFA7_RS00055 (ACKFA7_00055) | - | 8623..9063 (+) | 441 | WP_004264730.1 | YaaR family protein | - |
| ACKFA7_RS00060 (ACKFA7_00060) | holB | 9075..10064 (+) | 990 | WP_038456664.1 | DNA polymerase III subunit delta' | - |
| ACKFA7_RS00065 (ACKFA7_00065) | ricT | 10067..10894 (+) | 828 | WP_004264723.1 | competence/sporulation regulator complex protein RicT | - |
| ACKFA7_RS00070 (ACKFA7_00070) | yabA | 10909..11268 (+) | 360 | WP_004264720.1 | replication initiation-control protein YabA | - |
| ACKFA7_RS00075 (ACKFA7_00075) | - | 11329..12072 (+) | 744 | WP_038456667.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| ACKFA7_RS00080 (ACKFA7_00080) | - | 12059..12358 (+) | 300 | WP_038456669.1 | GIY-YIG nuclease family protein | - |
| ACKFA7_RS00085 (ACKFA7_00085) | rsmI | 12333..13214 (+) | 882 | WP_038463560.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| ACKFA7_RS00090 (ACKFA7_00090) | abrB | 13264..13554 (-) | 291 | WP_169510469.1 | transition state genes transcriptional regulator AbrB | Regulator |
| ACKFA7_RS00095 (ACKFA7_00095) | metG | 14038..16029 (+) | 1992 | WP_022552471.1 | methionine--tRNA ligase | - |
| ACKFA7_RS00100 (ACKFA7_00100) | - | 16106..16873 (+) | 768 | WP_032872179.1 | TatD family hydrolase | - |
| ACKFA7_RS00105 (ACKFA7_00105) | - | 17008..18333 (+) | 1326 | WP_023356663.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10753.57 Da Isoelectric Point: 6.3482
>NTDB_id=1078108 ACKFA7_RS00090 WP_169510469.1 13264..13554(-) (abrB) [Bacillus amyloliquefaciens strain 4-9-2]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=1078108 ACKFA7_RS00090 WP_169510469.1 13264..13554(-) (abrB) [Bacillus amyloliquefaciens strain 4-9-2]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
97.917 |
100 |
0.979 |