Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACJ2CR_RS20705 Genome accession   NZ_CP175551
Coordinates   5465709..5467070 (+) Length   453 a.a.
NCBI ID   WP_223746299.1    Uniprot ID   -
Organism   Myxococcus fulvus strain KYC1117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5460709..5472070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ2CR_RS20680 (ACJ2CR_20680) - 5461565..5461843 (-) 279 WP_046711372.1 hypothetical protein -
  ACJ2CR_RS20685 (ACJ2CR_20685) bioD 5461975..5462649 (-) 675 WP_223746302.1 dethiobiotin synthase -
  ACJ2CR_RS20690 (ACJ2CR_20690) bioF 5462810..5464003 (-) 1194 WP_408887965.1 8-amino-7-oxononanoate synthase -
  ACJ2CR_RS20695 (ACJ2CR_20695) bioB 5464015..5465043 (-) 1029 WP_223746300.1 biotin synthase BioB -
  ACJ2CR_RS20700 (ACJ2CR_20700) - 5465217..5465483 (-) 267 WP_141328824.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  ACJ2CR_RS20705 (ACJ2CR_20705) radA 5465709..5467070 (+) 1362 WP_223746299.1 DNA repair protein RadA Machinery gene
  ACJ2CR_RS20710 (ACJ2CR_20710) - 5467077..5467502 (-) 426 WP_408887966.1 helix-turn-helix domain-containing protein -
  ACJ2CR_RS20715 (ACJ2CR_20715) - 5467610..5468017 (+) 408 WP_141328818.1 DoxX family protein -
  ACJ2CR_RS20720 (ACJ2CR_20720) - 5468087..5468683 (-) 597 WP_223746297.1 hypothetical protein -
  ACJ2CR_RS20725 (ACJ2CR_20725) - 5468718..5469404 (-) 687 WP_141328814.1 STAS domain-containing protein -
  ACJ2CR_RS20730 (ACJ2CR_20730) - 5469838..5470512 (+) 675 WP_223746296.1 PAQR family membrane homeostasis protein TrhA -
  ACJ2CR_RS20735 (ACJ2CR_20735) - 5470823..5471347 (+) 525 WP_248542229.1 ABATE domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48017.38 Da        Isoelectric Point: 7.9219

>NTDB_id=1078101 ACJ2CR_RS20705 WP_223746299.1 5465709..5467070(+) (radA) [Myxococcus fulvus strain KYC1117]
MAKAKTHYTCQACGYQTAKWLGKCPDCGAWSSLLEEAGAKQDEKRPAWGASGGAAKPMLLKDVSGDAEVRQRTGIAEFDR
VLGGGVVAGSVVLLGGDPGIGKSTLLLAALDRLARQGAVLYVSGEESLRQTKMRAERLRVEGDSIHLFAETDAERVLAAA
ESLQPRALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFIVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVSDPSALFLSERPAGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDSNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLNEPACDLAVCAALVSSLQNRPLDPHTLVLGEVGLAGEV
RAVGQVEPRLIEAAKMGFKRVVMPAGSARRMEATKLRVVGVETLGDALRAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1078101 ACJ2CR_RS20705 WP_223746299.1 5465709..5467070(+) (radA) [Myxococcus fulvus strain KYC1117]
ATGGCGAAGGCGAAGACGCACTACACCTGCCAGGCGTGCGGGTACCAGACGGCGAAGTGGCTGGGGAAGTGCCCGGACTG
TGGCGCATGGAGCTCGCTCCTGGAGGAAGCCGGGGCGAAGCAGGACGAGAAGCGCCCGGCCTGGGGCGCCTCGGGCGGCG
CGGCGAAGCCCATGCTGCTCAAGGACGTCAGCGGGGACGCGGAGGTGCGCCAGCGCACCGGCATCGCCGAGTTCGACCGG
GTGCTGGGCGGCGGCGTGGTGGCGGGCTCCGTCGTCCTGTTGGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
CGCGGCCCTGGACCGGCTCGCGCGCCAGGGCGCGGTGCTCTACGTCTCCGGCGAGGAGAGCCTGCGCCAGACGAAGATGC
GCGCCGAGCGGCTGCGCGTGGAGGGCGACTCCATCCACCTGTTCGCGGAGACGGACGCGGAGCGGGTGCTGGCCGCCGCC
GAATCGCTCCAGCCGCGCGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGTTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCCGGGCGGCTGATGGCCTACGCCAAGCGCACGGGGGTGCCCACCTTCATCGTGGGCC
ACGTGACGAAGGAGGGCTCCATCGCGGGCCCCCGCGTGCTCGAGCACATGGTGGACACCGTGCTCTACTTCGAGGGCGAG
CGCGGCCACCCGTTCCGAATCCTGCGCGCGCACAAGAACCGCTTCGGCTCCACCAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGCTTGGTGGAGGTCTCGGACCCGTCCGCCCTCTTCCTGTCGGAGCGCCCCGCGGGCAAGTCCGGCAGCGTCG
TCACCAGCACGCTCAACGGCACCCGCCCCCTCCTGGTGGAGGTGCAGGCCTTGGTGGCCCCCACCGGCTACGGCACCGCG
CGGCGCACCGCCATCGGCGTGGACAGCAACCGCGTGGCCCTGCTCGCCGCCGTGCTGGAGAAGAAGGAGGAGATTCCCCT
CGTCGGGTGTGACTTGTTCGTCAACGTCGCGGGCGGCATGCAGCTCAACGAGCCCGCGTGCGACCTGGCTGTCTGCGCGG
CGCTGGTGAGCAGCCTGCAGAACCGGCCGCTGGACCCGCACACGCTGGTGCTGGGCGAGGTGGGCCTGGCGGGTGAGGTG
CGCGCGGTGGGCCAGGTGGAACCCCGGCTCATCGAGGCGGCGAAGATGGGCTTCAAGCGGGTGGTGATGCCCGCGGGCAG
CGCCCGGCGCATGGAGGCCACGAAGCTGCGCGTGGTGGGCGTGGAGACCCTGGGCGACGCGCTCCGGGCCATGTTCGACT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(79-219)

Subunit ChlI of Mg-chelatase (ChlI)

(337-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.642

100

0.536
  radA Streptococcus pneumoniae Rx1

52.539

100

0.525
  radA Streptococcus pneumoniae D39

52.539

100

0.525
  radA Streptococcus pneumoniae R6

52.539

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.539

100

0.525
  radA Streptococcus mitis SK321

52.318

100

0.523
  radA Streptococcus mitis NCTC 12261

52.318

100

0.523

Multiple sequence alignment