Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACJYYY_RS11120 Genome accession   NZ_CP175511
Coordinates   2261151..2262107 (-) Length   318 a.a.
NCBI ID   WP_035315072.1    Uniprot ID   W7CXI0
Organism   Brochothrix campestris strain DSM 4712     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2256151..2267107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJYYY_RS11100 (ACJYYY_11100) yycF 2257557..2258267 (-) 711 WP_035315077.1 response regulator YycF -
  ACJYYY_RS11105 (ACJYYY_11105) - 2258493..2259431 (-) 939 WP_035315076.1 siderophore ABC transporter substrate-binding protein -
  ACJYYY_RS11110 (ACJYYY_11110) - 2259453..2260214 (-) 762 WP_035315074.1 ABC transporter ATP-binding protein -
  ACJYYY_RS11115 (ACJYYY_11115) - 2260214..2261164 (-) 951 WP_269479285.1 iron chelate uptake ABC transporter family permease subunit -
  ACJYYY_RS11120 (ACJYYY_11120) ceuB 2261151..2262107 (-) 957 WP_035315072.1 ABC transporter permease Machinery gene
  ACJYYY_RS11125 (ACJYYY_11125) - 2262397..2262642 (+) 246 WP_035315071.1 hypothetical protein -
  ACJYYY_RS11130 (ACJYYY_11130) - 2262639..2263991 (+) 1353 WP_408868955.1 tripartite tricarboxylate transporter permease -
  ACJYYY_RS11135 (ACJYYY_11135) mvk 2264008..2264937 (+) 930 WP_035315069.1 mevalonate kinase -
  ACJYYY_RS11140 (ACJYYY_11140) mvaD 2264942..2265910 (+) 969 WP_035315067.1 diphosphomevalonate decarboxylase -
  ACJYYY_RS11145 (ACJYYY_11145) - 2265903..2266982 (+) 1080 WP_035315066.1 phosphomevalonate kinase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34542.81 Da        Isoelectric Point: 10.3291

>NTDB_id=1077902 ACJYYY_RS11120 WP_035315072.1 2261151..2262107(-) (ceuB) [Brochothrix campestris strain DSM 4712]
MKIWLLLIITIGLSIISLMTGVEHIAWGDIFHLNQAQQQIMLISRLPRLLAIVIAGAGISVCGMIMQRLTRNRFVSPTTA
GTMDAARLGVLVAMMVFPAASMLGKITVAFVFALAGTFVFIQLLNRIPLKDPVLIPLIGLMFGGVLNAVTTFFAYKNNLI
QNINSWMQGDFSAVLRGRYEWLYVAIPLFVLIYLFANRITLAGLGDSVAVGLGLNYRATVTIGLVIVSLMSAAIILTVGS
IPFLGLIVPNIVSLYLGDNLRQNLPLTALLGAAFVLACDILGRVVIYPYEVSISLMVGMIGSVIFLYLLLRRDVRGKA

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1077902 ACJYYY_RS11120 WP_035315072.1 2261151..2262107(-) (ceuB) [Brochothrix campestris strain DSM 4712]
GTGAAAATTTGGCTATTACTTATTATCACAATTGGACTGAGTATCATCTCGTTAATGACGGGTGTGGAACACATCGCCTG
GGGTGACATCTTCCATTTGAATCAGGCACAGCAACAAATTATGCTCATTTCACGTCTGCCCCGACTATTGGCGATTGTGA
TTGCGGGAGCCGGCATTAGCGTTTGCGGGATGATTATGCAACGTTTGACCCGTAATCGCTTCGTTTCACCTACGACAGCT
GGCACGATGGATGCTGCTCGACTCGGTGTACTCGTCGCGATGATGGTTTTTCCAGCAGCTAGCATGCTTGGGAAAATAAC
AGTTGCCTTTGTGTTTGCCTTAGCAGGCACCTTTGTTTTCATTCAATTGTTAAACCGGATTCCGTTGAAAGATCCCGTGC
TCATCCCACTGATTGGTTTAATGTTCGGTGGGGTATTGAATGCTGTCACAACTTTCTTTGCCTATAAAAACAACCTCATT
CAAAACATCAATTCATGGATGCAAGGTGATTTTTCGGCAGTTCTACGTGGACGGTATGAGTGGCTTTACGTGGCGATTCC
ACTATTTGTGCTGATTTATCTATTTGCCAATCGCATCACCTTGGCCGGGTTGGGTGACTCCGTTGCTGTTGGATTAGGGT
TGAATTACCGTGCAACGGTGACGATTGGTTTAGTGATTGTATCGTTGATGAGCGCGGCGATTATCTTAACAGTCGGTTCG
ATTCCATTTCTTGGTTTAATTGTACCAAACATCGTCAGCCTTTATCTCGGCGATAACCTTCGGCAAAACTTACCATTAAC
AGCTTTGTTAGGTGCAGCCTTCGTGCTTGCCTGTGATATTCTCGGCCGAGTTGTGATTTATCCGTACGAAGTTTCAATCA
GTTTAATGGTCGGTATGATTGGTAGCGTTATTTTTCTCTACCTCTTATTGAGGAGGGATGTACGTGGCAAAGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W7CXI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.799

98.428

0.5

Multiple sequence alignment