Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACJRRB_RS17370 Genome accession   NZ_CP174526
Coordinates   3565886..3566515 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NEBExpress(lowRF1)     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3560886..3571515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJRRB_RS17355 helD 3561128..3563182 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACJRRB_RS17360 yccF 3563305..3563751 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACJRRB_RS17365 yccS 3563761..3565923 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ACJRRB_RS17370 sxy/tfoX 3565886..3566515 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACJRRB_RS17375 sulA 3566734..3567243 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACJRRB_RS17380 ompA 3567600..3568640 (+) 1041 WP_000750416.1 porin OmpA -
  ACJRRB_RS17385 matP 3568716..3569168 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACJRRB_RS17390 ycbZ 3569354..3571114 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1077793 ACJRRB_RS17370 WP_000839153.1 3565886..3566515(-) (sxy/tfoX) [Escherichia coli strain NEBExpress(lowRF1)]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1077793 ACJRRB_RS17370 WP_000839153.1 3565886..3566515(-) (sxy/tfoX) [Escherichia coli strain NEBExpress(lowRF1)]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment