Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACJGE4_RS07295 Genome accession   NZ_CP174519
Coordinates   1398789..1399253 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain JD-3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393789..1404253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGE4_RS07275 (ACJGE4_07275) - 1394270..1396090 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  ACJGE4_RS07280 (ACJGE4_07280) - 1396071..1397284 (-) 1214 Protein_1375 aminotransferase A -
  ACJGE4_RS07285 (ACJGE4_07285) - 1397485..1397646 (-) 162 WP_007409608.1 hypothetical protein -
  ACJGE4_RS07290 (ACJGE4_07290) cheV 1397835..1398746 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  ACJGE4_RS07295 (ACJGE4_07295) kre 1398789..1399253 (-) 465 WP_003154622.1 YkyB family protein Regulator
  ACJGE4_RS07300 (ACJGE4_07300) - 1399376..1400668 (-) 1293 WP_015239757.1 MFS transporter -
  ACJGE4_RS07305 (ACJGE4_07305) - 1400744..1401238 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  ACJGE4_RS07310 (ACJGE4_07310) - 1401313..1402176 (-) 864 WP_038463786.1 metallophosphoesterase -
  ACJGE4_RS07315 (ACJGE4_07315) fadH 1402321..1403085 (+) 765 WP_038463789.1 2,4-dienoyl-CoA reductase -
  ACJGE4_RS07320 (ACJGE4_07320) - 1403224..1403745 (+) 522 WP_099320047.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1077713 ACJGE4_RS07295 WP_003154622.1 1398789..1399253(-) (kre) [Bacillus velezensis strain JD-3]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1077713 ACJGE4_RS07295 WP_003154622.1 1398789..1399253(-) (kre) [Bacillus velezensis strain JD-3]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment