Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   ACJGE4_RS01930 Genome accession   NZ_CP174519
Coordinates   360091..360489 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain JD-3     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 355091..365489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGE4_RS01905 (ACJGE4_01905) - 355262..356464 (+) 1203 WP_069007411.1 GTP-binding protein -
  ACJGE4_RS01910 (ACJGE4_01910) - 356529..357665 (+) 1137 WP_094031490.1 zinc-dependent alcohol dehydrogenase -
  ACJGE4_RS01915 (ACJGE4_01915) - 357680..358114 (+) 435 WP_094031491.1 RDD family protein -
  ACJGE4_RS01920 (ACJGE4_01920) - 358232..358510 (+) 279 WP_263612330.1 YckD family protein -
  ACJGE4_RS01925 (ACJGE4_01925) - 358614..360050 (+) 1437 WP_076425807.1 glycoside hydrolase family 1 protein -
  ACJGE4_RS01930 (ACJGE4_01930) nin/comJ 360091..360489 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  ACJGE4_RS01935 (ACJGE4_01935) nucA/comI 360510..360947 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACJGE4_RS01940 (ACJGE4_01940) hxlB 361306..361863 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  ACJGE4_RS01945 (ACJGE4_01945) hxlA 361860..362495 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  ACJGE4_RS01950 (ACJGE4_01950) - 362727..363089 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=1077691 ACJGE4_RS01930 WP_007609299.1 360091..360489(-) (nin/comJ) [Bacillus velezensis strain JD-3]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1077691 ACJGE4_RS01930 WP_007609299.1 360091..360489(-) (nin/comJ) [Bacillus velezensis strain JD-3]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCCAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment