Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACJED4_RS15310 Genome accession   NZ_CP174518
Coordinates   2955341..2955802 (+) Length   153 a.a.
NCBI ID   WP_407968841.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G03     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2950341..2960802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS15280 - 2950381..2950878 (+) 498 WP_019743906.1 L,D-transpeptidase family protein -
  ACJED4_RS15285 - 2950952..2952229 (+) 1278 WP_046343422.1 MFS transporter -
  ACJED4_RS15290 - 2952454..2952630 (-) 177 WP_164071367.1 hypothetical protein -
  ACJED4_RS15295 - 2952795..2953010 (+) 216 WP_008348016.1 hypothetical protein -
  ACJED4_RS15300 - 2953180..2954111 (-) 932 Protein_2977 DMT family transporter -
  ACJED4_RS15305 - 2954225..2955121 (+) 897 WP_035392220.1 helix-turn-helix domain-containing protein -
  ACJED4_RS15310 kre 2955341..2955802 (+) 462 WP_407968841.1 YkyB family protein Regulator
  ACJED4_RS15315 - 2955837..2956745 (-) 909 WP_008348035.1 chemotaxis protein -
  ACJED4_RS15320 - 2956819..2958129 (-) 1311 WP_407968842.1 MFS transporter -
  ACJED4_RS15325 - 2958254..2958793 (-) 540 WP_407968843.1 RDD family protein -
  ACJED4_RS15330 - 2959094..2959246 (+) 153 WP_017367142.1 hypothetical protein -
  ACJED4_RS15335 - 2959311..2960195 (-) 885 WP_407968844.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17725.33 Da        Isoelectric Point: 10.2452

>NTDB_id=1077666 ACJED4_RS15310 WP_407968841.1 2955341..2955802(+) (kre) [Bacillus altitudinis strain G03]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIAD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1077666 ACJED4_RS15310 WP_407968841.1 2955341..2955802(+) (kre) [Bacillus altitudinis strain G03]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGCAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCAAAAGCGAATATGTCATTAAATCGAGCAAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.325

100

0.758

Multiple sequence alignment