Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACJED4_RS13390 Genome accession   NZ_CP174518
Coordinates   2572014..2572394 (-) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G03     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2567014..2577394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS13355 - 2567603..2567833 (-) 231 WP_008343816.1 DUF896 domain-containing protein -
  ACJED4_RS13360 - 2567903..2568550 (-) 648 WP_017359583.1 recombinase family protein -
  ACJED4_RS13365 yneA 2568568..2568879 (-) 312 WP_007499348.1 cell division suppressor protein YneA -
  ACJED4_RS13370 lexA 2569039..2569659 (+) 621 WP_007499350.1 transcriptional repressor LexA -
  ACJED4_RS13375 - 2569707..2570150 (-) 444 WP_008343821.1 hypothetical protein -
  ACJED4_RS13380 - 2570447..2570989 (+) 543 WP_017367324.1 IseA DL-endopeptidase inhibitor family protein -
  ACJED4_RS13385 - 2571022..2571870 (-) 849 WP_017367323.1 STAS domain-containing protein -
  ACJED4_RS13390 nucA/comI 2572014..2572394 (-) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACJED4_RS13395 - 2572622..2574616 (-) 1995 WP_407968824.1 glycosyltransferase family 39 protein -
  ACJED4_RS13400 - 2574761..2575669 (-) 909 WP_008343827.1 serine protease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=1077659 ACJED4_RS13390 WP_224559893.1 2572014..2572394(-) (nucA/comI) [Bacillus altitudinis strain G03]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1077659 ACJED4_RS13390 WP_224559893.1 2572014..2572394(-) (nucA/comI) [Bacillus altitudinis strain G03]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment