Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACJED4_RS11995 Genome accession   NZ_CP174518
Coordinates   2300859..2301494 (-) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain G03     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2295859..2306494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS11975 - 2296223..2296927 (+) 705 WP_007500879.1 DnaD domain-containing protein -
  ACJED4_RS11980 nth 2296945..2297607 (+) 663 WP_008344602.1 endonuclease III -
  ACJED4_RS11985 - 2297604..2298113 (+) 510 WP_035391678.1 YpoC family protein -
  ACJED4_RS11990 - 2298149..2300839 (-) 2691 WP_407968804.1 PBP1A family penicillin-binding protein -
  ACJED4_RS11995 recU 2300859..2301494 (-) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  ACJED4_RS12000 - 2301541..2302497 (+) 957 WP_202734378.1 DUF2515 domain-containing protein -
  ACJED4_RS12005 sspM 2302521..2302625 (-) 105 WP_017359731.1 acid-soluble spore protein SspM -
  ACJED4_RS12010 - 2302822..2303055 (+) 234 WP_234717153.1 DUF5446 family protein -
  ACJED4_RS12015 - 2303105..2303485 (+) 381 WP_236781826.1 YppE family protein -
  ACJED4_RS12020 - 2303594..2304046 (+) 453 WP_017359729.1 YppG family protein -
  ACJED4_RS12025 - 2304068..2304487 (-) 420 WP_017359728.1 Hsp20/alpha crystallin family protein -
  ACJED4_RS12030 - 2304656..2305162 (+) 507 WP_047945923.1 PTS glucose transporter subunit IIA -
  ACJED4_RS12035 - 2305213..2306331 (-) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=1077658 ACJED4_RS11995 WP_017359733.1 2300859..2301494(-) (recU) [Bacillus altitudinis strain G03]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1077658 ACJED4_RS11995 WP_017359733.1 2300859..2301494(-) (recU) [Bacillus altitudinis strain G03]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTTTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment