Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACJED4_RS10520 Genome accession   NZ_CP174518
Coordinates   2038020..2038790 (+) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G03     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2033020..2043790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS10490 - 2033326..2035440 (+) 2115 WP_407969087.1 HD family phosphohydrolase -
  ACJED4_RS10495 ybeY 2035441..2035920 (+) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  ACJED4_RS10500 - 2035898..2036284 (+) 387 WP_008342413.1 diacylglycerol kinase family protein -
  ACJED4_RS10505 - 2036397..2036795 (+) 399 WP_008342410.1 cytidine deaminase -
  ACJED4_RS10510 era 2036788..2037693 (+) 906 WP_007501305.1 GTPase Era -
  ACJED4_RS10515 - 2037841..2037984 (+) 144 WP_008342408.1 YqzL family protein -
  ACJED4_RS10520 recO 2038020..2038790 (+) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  ACJED4_RS10525 glyQ 2039120..2040007 (+) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  ACJED4_RS10530 glyS 2040000..2042045 (+) 2046 WP_146271086.1 glycine--tRNA ligase subunit beta -
  ACJED4_RS10535 - 2042212..2042850 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  ACJED4_RS10540 - 2042876..2043697 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=1077652 ACJED4_RS10520 WP_007501304.1 2038020..2038790(+) (recO) [Bacillus altitudinis strain G03]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1077652 ACJED4_RS10520 WP_007501304.1 2038020..2038790(+) (recO) [Bacillus altitudinis strain G03]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACTGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment