Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACJED4_RS02570 Genome accession   NZ_CP174518
Coordinates   527994..528284 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G03     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 522994..533284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS02555 - 523178..524380 (-) 1203 WP_017359324.1 G5 and 3D domain-containing protein -
  ACJED4_RS02560 - 524625..525392 (-) 768 WP_407968956.1 TatD family hydrolase -
  ACJED4_RS02565 metG 525474..527474 (-) 2001 WP_008341884.1 methionine--tRNA ligase -
  ACJED4_RS02570 abrB 527994..528284 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACJED4_RS02575 rsmI 528329..529210 (-) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACJED4_RS02580 - 529185..529484 (-) 300 WP_046342410.1 GIY-YIG nuclease family protein -
  ACJED4_RS02585 - 529471..530214 (-) 744 WP_407968957.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACJED4_RS02590 yabA 530270..530623 (-) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  ACJED4_RS02595 - 530638..531465 (-) 828 WP_007496230.1 stage 0 sporulation family protein -
  ACJED4_RS02600 holB 531468..532457 (-) 990 WP_007496231.1 DNA polymerase III subunit delta' -
  ACJED4_RS02605 - 532469..532909 (-) 441 WP_035391564.1 YaaR family protein -
  ACJED4_RS02610 - 532922..533251 (-) 330 WP_012008640.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=1077626 ACJED4_RS02570 WP_087975202.1 527994..528284(+) (abrB) [Bacillus altitudinis strain G03]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1077626 ACJED4_RS02570 WP_087975202.1 527994..528284(+) (abrB) [Bacillus altitudinis strain G03]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment