Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACJED4_RS00830 Genome accession   NZ_CP174518
Coordinates   203180..203608 (+) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain G03     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 198180..208608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS00820 - 198769..200754 (-) 1986 WP_182489522.1 hydantoinase B/oxoprolinase family protein -
  ACJED4_RS00825 - 200744..202813 (-) 2070 WP_236810211.1 hydantoinase/oxoprolinase family protein -
  ACJED4_RS00830 nucA/comI 203180..203608 (+) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACJED4_RS00835 - 203735..205432 (+) 1698 WP_035703163.1 methyl-accepting chemotaxis protein -
  ACJED4_RS00840 comJ 205570..205956 (+) 387 WP_050826928.1 competence protein ComJ -
  ACJED4_RS00845 - 205958..206764 (-) 807 WP_076822633.1 aminoglycoside N(3)-acetyltransferase -
  ACJED4_RS00850 - 206789..207208 (-) 420 WP_008347846.1 Lrp/AsnC family transcriptional regulator -
  ACJED4_RS00855 - 207324..208088 (+) 765 WP_039963201.1 MBL fold metallo-hydrolase -
  ACJED4_RS00860 - 208135..208464 (-) 330 WP_007498247.1 YckD family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=1077623 ACJED4_RS00830 WP_007498233.1 203180..203608(+) (nucA/comI) [Bacillus altitudinis strain G03]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1077623 ACJED4_RS00830 WP_007498233.1 203180..203608(+) (nucA/comI) [Bacillus altitudinis strain G03]
ATGAAACTTCTTAAAACCATTCTATTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment