Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACJROX_RS20455 Genome accession   NZ_CP174509
Coordinates   3980775..3983135 (-) Length   786 a.a.
NCBI ID   WP_408007048.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. A8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3975775..3988135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJROX_RS20435 (ACJROX_20435) - 3976366..3977136 (+) 771 WP_408011717.1 N-acetylmuramoyl-L-alanine amidase -
  ACJROX_RS20440 (ACJROX_20440) dtd 3977362..3977814 (-) 453 WP_408007044.1 D-aminoacyl-tRNA deacylase -
  ACJROX_RS20445 (ACJROX_20445) - 3977828..3979999 (-) 2172 WP_408007045.1 RelA/SpoT family protein -
  ACJROX_RS20450 (ACJROX_20450) - 3980258..3980770 (-) 513 WP_408007047.1 adenine phosphoribosyltransferase -
  ACJROX_RS20455 (ACJROX_20455) recJ 3980775..3983135 (-) 2361 WP_408007048.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACJROX_RS20460 (ACJROX_20460) - 3983201..3983545 (-) 345 WP_408007049.1 lipopolysaccharide assembly LapA domain-containing protein -
  ACJROX_RS20465 (ACJROX_20465) - 3983548..3984459 (-) 912 WP_408007050.1 cation diffusion facilitator family transporter -
  ACJROX_RS20470 (ACJROX_20470) secDF 3984680..3986926 (-) 2247 WP_408007051.1 protein translocase subunit SecDF -
  ACJROX_RS20475 (ACJROX_20475) - 3987023..3987319 (-) 297 WP_408007052.1 post-transcriptional regulator -
  ACJROX_RS20480 (ACJROX_20480) - 3987374..3987859 (-) 486 WP_408007053.1 COG2426 family protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88986.36 Da        Isoelectric Point: 4.7932

>NTDB_id=1077549 ACJROX_RS20455 WP_408007048.1 3980775..3983135(-) (recJ) [Pseudalkalibacillus sp. A8]
MLNSRTRWCVTEVDQSKTDELVNSLGLSPLVAGLLVNRGKQDIDEVKNFLHTENVDFHDPFLMDGMDSAVERIKKAIKQQ
EKILIFGDYDADGVSSTSVMIYTLRELGAEFDYYIPNRFTEGYGPNEAAFRWAQEQGYTLIVTVDTGISAIHEAEVAKEI
GIDLIITDHHEPQPELPNTFATINPKKPGCPYPFKGLAGVGVAIKVSHALLGEAPLHLLDIACIGTIADLVPLVDENRLI
VKIGIEKLETTSKPGLQALLKVCGLEEKQLSSEHIGFGIGPRVNAAGRLDSADPAVDLFTTSDPEKAEMIAQEIDAMNKE
RQSLVNGITKEAVEIVESKYPPEKNSVLVIAKEGWNPGVIGIVASRIVEKFYRPTIILSIDPEKGVAKGSARSIAGFDMF
ENLSECRDILPHFGGHPMAAGMTLQLQYLDTLRERLNRQAEEKLTEEDFSPITSIDLRCSVDDISLDVIEELQALEPFGV
DNPKPRFLIDQCRLKEIRRIGSDSKHLKLTLLGERSNLDVIGFHFGEVFEEITPNASISVVGELSINEWNGFRKPQLMLQ
DIAVKEKQLFDYRGIKNLASRLELLNRSKVQLLSFKEETIRSLSLKDWEDHIIRISEDVSLETLELGGRYLIILDLPSSK
DQLKQLMSYGSSAERVYTVFHHEEDHYFNPIPTRDSFKWYYAFLKKQGTFDYKRRAEELAAYKGWQKESVYFMSQVFFEL
EFVTIDNGVISVTDQPMKRPLTESMTYRRKQEQASLENDLCYSSYRDLKRWFFENEKDAVRFEEAY

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=1077549 ACJROX_RS20455 WP_408007048.1 3980775..3983135(-) (recJ) [Pseudalkalibacillus sp. A8]
ATGTTGAATTCGAGGACACGTTGGTGTGTCACGGAAGTAGACCAGTCAAAAACGGATGAACTGGTGAACAGCCTTGGTCT
ATCACCGCTTGTAGCGGGATTGTTAGTCAATAGAGGTAAGCAAGACATAGATGAAGTGAAGAACTTTTTACATACGGAGA
ATGTTGATTTTCACGACCCTTTCCTGATGGATGGAATGGATTCAGCGGTTGAACGGATTAAGAAAGCAATTAAGCAACAA
GAAAAAATCTTGATTTTTGGAGATTATGATGCAGATGGTGTAAGCAGTACATCGGTCATGATTTATACCTTACGCGAACT
TGGAGCAGAATTTGACTACTATATTCCTAATCGTTTCACTGAAGGATATGGTCCTAACGAAGCCGCTTTCAGATGGGCAC
AGGAGCAAGGATATACGTTGATCGTTACGGTAGATACAGGCATTTCTGCCATTCATGAGGCAGAAGTAGCAAAGGAAATT
GGGATTGATCTAATCATAACGGATCATCATGAGCCTCAGCCCGAGCTGCCGAATACATTTGCAACGATCAATCCGAAGAA
ACCTGGATGTCCTTATCCATTTAAAGGACTAGCAGGGGTAGGTGTGGCGATCAAGGTATCTCATGCGCTTTTAGGAGAGG
CTCCGCTGCATTTGCTTGATATTGCTTGTATCGGAACGATTGCCGATCTAGTCCCACTGGTAGATGAGAACCGATTGATT
GTAAAAATCGGGATCGAAAAACTAGAAACGACTTCAAAGCCTGGTTTACAAGCCTTATTGAAAGTCTGTGGATTAGAAGA
AAAACAACTTTCATCTGAACACATCGGATTTGGAATCGGTCCACGTGTCAATGCAGCTGGAAGACTGGACTCCGCTGATC
CTGCTGTTGATTTGTTTACGACCTCCGATCCAGAGAAAGCCGAGATGATAGCTCAAGAAATTGATGCAATGAATAAAGAA
AGGCAAAGCTTGGTCAATGGAATTACGAAAGAAGCCGTGGAAATTGTAGAAAGCAAATATCCACCTGAAAAAAATTCCGT
ATTGGTCATTGCGAAGGAGGGTTGGAATCCTGGTGTGATTGGCATAGTCGCATCTCGTATCGTAGAAAAATTCTATCGGC
CTACGATCATTTTGAGTATCGATCCGGAAAAAGGTGTCGCAAAGGGTTCCGCTCGAAGTATCGCTGGATTTGATATGTTT
GAGAATTTATCAGAATGCCGTGATATTTTACCGCATTTTGGCGGACATCCAATGGCAGCAGGTATGACACTACAGCTTCA
ATACCTTGATACGTTGAGGGAAAGGCTCAATCGACAGGCGGAAGAAAAATTGACAGAGGAAGATTTTTCTCCGATAACCT
CCATAGATCTTCGATGTTCTGTTGATGACATCTCACTTGATGTCATTGAAGAACTTCAAGCATTGGAGCCATTCGGCGTT
GACAATCCTAAGCCCAGATTTCTCATCGACCAATGTCGGTTAAAAGAGATTCGTAGGATAGGGAGTGATTCCAAGCACTT
GAAACTAACGCTTTTAGGGGAACGTTCTAATCTGGATGTGATCGGTTTTCATTTCGGAGAGGTGTTCGAAGAAATCACAC
CGAACGCTTCAATTTCAGTCGTAGGCGAGCTGTCGATCAATGAATGGAATGGATTTAGAAAGCCTCAATTGATGCTTCAA
GATATCGCGGTCAAAGAAAAGCAGCTTTTTGACTACCGTGGAATCAAAAATCTTGCGAGTAGATTGGAGCTCCTTAATCG
GAGCAAGGTCCAGTTGCTTTCTTTTAAAGAAGAAACGATAAGGTCATTAAGCTTGAAGGATTGGGAGGATCATATAATAC
GAATTTCAGAGGATGTTTCGCTTGAAACCCTTGAACTTGGTGGCCGATATTTGATTATTCTGGACTTGCCTTCAAGTAAG
GATCAATTGAAGCAACTAATGTCCTATGGTTCATCAGCAGAACGTGTTTATACGGTTTTCCACCATGAAGAAGATCATTA
TTTCAATCCGATTCCGACAAGGGATTCTTTCAAATGGTATTATGCCTTTTTGAAGAAGCAAGGTACGTTTGACTATAAGA
GACGTGCAGAGGAACTAGCAGCTTATAAAGGTTGGCAGAAAGAGTCTGTCTATTTTATGTCACAGGTGTTTTTTGAACTT
GAATTTGTTACAATAGACAATGGTGTTATTTCAGTAACAGATCAACCAATGAAACGACCGCTTACTGAATCTATGACGTA
TAGGAGAAAGCAAGAGCAGGCAAGTCTAGAGAACGACTTATGTTACTCCTCCTATCGTGATTTAAAGCGTTGGTTTTTTG
AGAACGAAAAAGATGCTGTTCGATTTGAGGAGGCTTACTAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-772)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.368

98.219

0.524

Multiple sequence alignment